当前解析结果
SmilChr05G003877| 统一新 Gene ID | SmilChr05G003877 |
|---|---|
| 名称 | SmilChr05G003877 |
| 描述 | RNA-binding protein involved in heterochromatin assembly dri1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 52348072 - 52349376 / + |
| NCBI Gene ID | LOC131024992 |
|---|---|
| GeneID | 131024992 |
| locus_tag | - |
| NCBI Name | LOC131024992 |
| 原始查询 | SmilChr05G003877 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA-binding protein involved in heterochromatin assembly dri1-like |
| 产物 | RNA-binding protein involved in heterochromatin assembly dri1-like |
| Arabidopsis | AT3G15680 (AT3G15680)Ran BP2/NZF zinc finger-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820811] identity=60.4; qcov=1.21; evalue=7.31e-60; confidence=high |
| Rice | Os06g0141200 (OsZFP1)- identity=56.1; qcov=1.02; evalue=1.03e-50; confidence=medium |
| GO | GO:0003729 (mRNA binding); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF00641 (Zn_ribbon_RanBP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024992 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057810575.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057810575.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057810575.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057810575.1 |
| 5 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057810575.1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810575.1PF00641
Zn_ribbon_RanBP 3-31 aa
PF00641
Zn_ribbon_RanBP 42-69 aa
PF00641
Zn_ribbon_RanBP 99-129 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810575.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 3 | 31 | 2.3e-21 | 75.4 | Zn-finger in Ran binding protein and others |
XP_057810575.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 42 | 69 | 2.3e-21 | 75.4 | Zn-finger in Ran binding protein and others |
XP_057810575.1 |
Pfam | PF00641 |
Zn_ribbon_RanBP | Domain | 99 | 129 | 2.3e-21 | 75.4 | Zn-finger in Ran binding protein and others |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。