Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003888`

染色体: Chr05 坐标: 52621163-52625736 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003888`
名称	SmilChr05G003888
描述	boron transporter 4-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52621163 - 52625736 / `-`

ID 对照

NCBI Gene ID	`LOC131024912`
GeneID	`131024912`
locus_tag	`-`
NCBI Name	`LOC131024912`
原始查询	`SmilChr05G003888`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	boron transporter 4-like
产物	boron transporter 4-like
Arabidopsis	`AT1G15460` (BOR4) HCO3- transporter family [Source:NCBI gene (formerly Entrezgene);Acc:838116] identity=63.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0175700` (BOR2) - identity=63.8; qcov=0.998; evalue=0; confidence=high
GO	GO:0005452 (solute:inorganic anion antiporter activity); GO:0005886 (plasma membrane); GO:0006820 (monoatomic anion transport); GO:0050801 (monoatomic ion homeostasis); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00955 (HCO3_cotransp)
InterPro	-
eggNOG	-
NR	GeneID:131024912

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057810453.1`
2	Vacuole membrane	液泡膜	0.20000	`XP_057810453.1`
3	Nucleus	细胞核	0.00000	`XP_057810453.1`
4	Chromosome	染色体	0.00000	`XP_057810453.1`
5	Centromere	着丝粒	0.00000	`XP_057810453.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52621604`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C29,C73
`Chr5:52621746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr5:52621830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:52622002`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B86
`Chr5:52622002`	`CT`	`C`	1bp_deletion	CDS_variant	1	B86
`Chr5:52622004`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr5:52622020`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B30,D2,D8
`Chr5:52622036`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D2,D8
`Chr5:52622048`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,C20
`Chr5:52622064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B119,B130,B66,C20
`Chr5:52622171`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr5:52623154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810453.1

663 aa

332

663

HCO3_cotransp

PF00955 HCO3_cotransp 8-179 aa PF00955 HCO3_cotransp 199-374 aa PF00955 HCO3_cotransp 449-591 aa

XP_057810454.1

663 aa

332

663

HCO3_cotransp

PF00955 HCO3_cotransp 8-179 aa PF00955 HCO3_cotransp 199-374 aa PF00955 HCO3_cotransp 449-591 aa

XP_057810455.1

662 aa

331

662

HCO3_cotransp

PF00955 HCO3_cotransp 8-179 aa PF00955 HCO3_cotransp 199-374 aa PF00955 HCO3_cotransp 449-591 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810453.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	8	179	9.3e-93	312.5	HCO3- transporter integral membrane domain
`XP_057810453.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	199	374	9.3e-93	312.5	HCO3- transporter integral membrane domain
`XP_057810453.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	449	591	9.3e-93	312.5	HCO3- transporter integral membrane domain
`XP_057810454.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	8	179	9.3e-93	312.5	HCO3- transporter integral membrane domain
`XP_057810454.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	199	374	9.3e-93	312.5	HCO3- transporter integral membrane domain
`XP_057810454.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	449	591	9.3e-93	312.5	HCO3- transporter integral membrane domain
`XP_057810455.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	8	179	9.3e-93	312.5	HCO3- transporter integral membrane domain
`XP_057810455.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	199	374	9.3e-93	312.5	HCO3- transporter integral membrane domain
`XP_057810455.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	449	591	9.3e-93	312.5	HCO3- transporter integral membrane domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057954471.1
AAAAAAAGAAACAAAGTTTCTCATGTCACATTAATGCATGCATTCGTTTGTTTCTATATCTGTATCTATTTCTTTCTGTATCTTCCTCTCTCTAAATTAAAGCTTCATGCATTGCTGCATTTCTCCTGAATAATATCTGGGAAATAAAGAAAATAGGAGGGGAATTGGAAACGAGCTTAATTACACACAGCAAACTGAGTGTGTGTGTGAGAGCCTGTGAAATGGATAGCCTTAAGACTCCTCTCAAAGGAGTAACCAGA...

XM_057954470.1
AAAAAAAGAAACAAAGTTTCTCATGTCACATTAATGCATGCATTCGTTTGTTTCTATATCTGTATCTATTTCTTTCTGTATCTTCCTCTCTCTAAATTAAAGCTTCATGCATTGCTGCATTTCTCCTGAATAATATCTGGGAAATAAAGAAAATAGGAGGGGAATTGGAAACGAGCTTAATTACACACAGCAAACTGAGTGTGTGTGTGAGAGGTAGAGAGAGAGCCTGTGAAATGGATAGCCTTAAGACTCCTCTCAAA...

CDS

3 records

下载 CDS FASTA

LOC131024912
ATGGATAGCCTTAAGACTCCTCTCAAAGGAGTAACCAGAGATTTCAAAGGAAGGCTTGCATGCTACAAAAAAGATTGGCTCGATTCATGTAGTTCCGGTCCAAGGATTTTGGCTCCAGCAGCATACATTTTCTTCGCTTCTGCTCTCCCTGTAGTCGCCTTTGGGGAGCAATTGAGTCGAGAAACAGACGCGAGCTTGAGCACAGATGAGACTCTCCTGTCTACTGCCATATGTGGTGTCATCCACTCGATTTTTGGTGG...

Protein

3 records

下载 Protein FASTA

XP_057810453.1
MDSLKTPLKGVTRDFKGRLACYKKDWLDSCSSGPRILAPAAYIFFASALPVVAFGEQLSRETDASLSTDETLLSTAICGVIHSIFGGQPLLILGVAEPTIIMYSYLYSFAKSNIGKELYLAWAAWVCVWTALLLFLLAIFNACTIITRFTRVAGELFGMLISVLFLQEAIKGVVSEFHVPQGEDGGEEQNQFEWLYINGLLSVVFMFGVLITCLKTREARSWRYGTAMMRSFIADYGVPLMVVVWTALSYSAPGRLPSGV...

XP_057810454.1
MDSLKTPLKGVTRDFKGRLACYKKDWLDSCSSGPRILAPAAYIFFASALPVVAFGEQLSRETDASLSTDETLLSTAICGVIHSIFGGQPLLILGVAEPTIIMYSYLYSFAKSNIGKELYLAWAAWVCVWTALLLFLLAIFNACTIITRFTRVAGELFGMLISVLFLQEAIKGVVSEFHVPQGEDGGEEQNQFEWLYINGLLSVVFMFGVLITCLKTREARSWRYGTAMMRSFIADYGVPLMVVVWTALSYSAPGRLPSGV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器