Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003892`

染色体: Chr05 坐标: 52645288-52647911 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003892`
名称	SmilChr05G003892
描述	probable indole-3-pyruvate monooxygenase YUCCA4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52645288 - 52647911 / `+`

ID 对照

NCBI Gene ID	`LOC131024940`
GeneID	`131024940`
locus_tag	`-`
NCBI Name	`LOC131024940`
原始查询	`SmilChr05G003892`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable indole-3-pyruvate monooxygenase YUCCA4
产物	probable indole-3-pyruvate monooxygenase YUCCA4
Arabidopsis	`AT5G11320` (YUC4) Flavin-binding monooxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831003] identity=68.5; qcov=0.932; evalue=0; confidence=high
Rice	`Os01g0732700` (YUCCA3) - identity=56.6; qcov=0.997; evalue=7.02e-160; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0009851 (auxin biosynthetic process); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00743 (FMO-like); PF01494 (FAD_binding_3); PF07992 (Pyr_redox_2); PF13434 (Lys_Orn_oxgnase); PF13450 (NAD_binding_8); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:131024940

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.40000	`XP_057810489.1`
2	Lipid droplet	脂滴	0.40000	`XP_057810489.1`
3	Cytosol	细胞质基质	0.20000	`XP_057810489.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057810489.1`
5	Nucleus	细胞核	0.00000	`XP_057810489.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52645422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B140,B46,B53,C23
`Chr5:52645454`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B140,B46,B53
`Chr5:52645490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,B38,C78
`Chr5:52645493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B130,B66,C33
`Chr5:52645529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B49,C44
`Chr5:52645694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B99,C14,C50
`Chr5:52645754`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B131,B60
`Chr5:52645766`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,B79,C16
`Chr5:52645838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr5:52645850`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr5:52645859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B17,C34,C40
`Chr5:52646318`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B94,B99,C14,C50,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810489.1

395 aa

198

395

FAD_binding_3

Pyr_redox_2

FMO-like

Pyr_redox_3

NAD_binding_8

Lys_Orn_oxgnase

PF01494 FAD_binding_3 15-48 aa PF07992 Pyr_redox_2 17-204 aa PF00743 FMO-like 17-329 aa PF13738 Pyr_redox_3 18-209 aa PF13450 NAD_binding_8 19-71 aa PF13434 Lys_Orn_oxgnase 79-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810489.1`	Pfam	`PF01494`	FAD_binding_3	Domain	15	48	5.9e-07	29.7	FAD binding domain
`XP_057810489.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	17	204	1.7e-13	51.3	Pyridine nucleotide-disulphide oxidoreductase
`XP_057810489.1`	Pfam	`PF00743`	FMO-like	Family	17	329	3.4e-24	85.9	Flavin-binding monooxygenase-like
`XP_057810489.1`	Pfam	`PF13738`	Pyr_redox_3	Family	18	209	7.8e-25	88.5	Pyridine nucleotide-disulphide oxidoreductase
`XP_057810489.1`	Pfam	`PF13450`	NAD_binding_8	Domain	19	71	6.4e-06	27.1	NAD(P)-binding Rossmann-like domain
`XP_057810489.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	79	198	3.6e-12	46.8	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954506.1
ACACACACTTGATTTCACTTTAAAAACCCACCCTTCCTCTGCTACAAAAACAGAGTTTCTTTCAAACACACACACACACACACAAAAGGCATCTTTTCTTCTGCTTCCATTCCTCCAAAATGGCTTCTCTCAACGACGACGCCAATAACCCACTCCACCGCTGCCTCGTCGTGATCGTGGGCGCCGGGCCCTCGGGCCTCGCCGTGGCCGCATGCCTGCAGCGGAACGGCGTTCCATCCCTCATTCTCGAACGAAGCTCC...

CDS

1 records

下载 CDS FASTA

LOC131024940
ATGGCTTCTCTCAACGACGACGCCAATAACCCACTCCACCGCTGCCTCGTCGTGATCGTGGGCGCCGGGCCCTCGGGCCTCGCCGTGGCCGCATGCCTGCAGCGGAACGGCGTTCCATCCCTCATTCTCGAACGAAGCTCCTGCCTAGCCTCGCTGTGGCGCGACCGAACCTACGACAGGCTCAAACTCCACCTCCCGAAGCACCTCTGCCACCTCCCGTTCCTCGATTTCCCGCGCCATTTCCCCACGTACCCGACCAA...

Protein

1 records

下载 Protein FASTA

XP_057810489.1
MASLNDDANNPLHRCLVVIVGAGPSGLAVAACLQRNGVPSLILERSSCLASLWRDRTYDRLKLHLPKHLCHLPFLDFPRHFPTYPTKDQFVEYVESYARHFSIGPRFGQTVVRAEFDPAVGLWRVQSQDRLYVSSFLVVASGENVEPVMPDITGFETFSGPIIHTCAYKSGLEFRNRRVLVVGCGNSGMEVSLDLCRYNAIPHMVVRNSVHILPRDILGISTFALAMALLKWLPLRLVDKLLLVLATFTLGDTEAFGLPR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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