Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003897`

染色体: Chr05 坐标: 52733081-52737310 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003897`
名称	SmilChr05G003897
描述	E3 ubiquitin-protein ligase At1g63170-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52733081 - 52737310 / `+`

ID 对照

NCBI Gene ID	`LOC131024936`
GeneID	`131024936`
locus_tag	`-`
NCBI Name	`LOC131024936`
原始查询	`SmilChr05G003897`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase At1g63170-like
产物	E3 ubiquitin-protein ligase At1g63170-like
Arabidopsis	`AT4G32600` (AT4G32600) C3H4 type zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:829395] identity=61.5; qcov=1; evalue=2.74e-157; confidence=high
Rice	`Os05g0179000` (OsRFPH2-5) - identity=52.1; qcov=0.947; evalue=1.59e-141; confidence=high
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131024936

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057810482.1`
2	Vacuole membrane	液泡膜	0.80000	`XP_057810482.1`
3	Cell membrane	细胞膜	0.20000	`XP_057810482.1`
4	Endosome	内体	0.20000	`XP_057810482.1`
5	Nucleus	细胞核	0.00000	`XP_057810482.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52734781`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B41,C69
`Chr5:52735850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,A3,B30
`Chr5:52736076`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,A25
`Chr5:52736972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810482.1

419 aa

210

419

zf-RING_2

zf-RING_11

zf-C3HC4

PF13639 zf-RING_2 353-395 aa PF17123 zf-RING_11 354-381 aa PF00097 zf-C3HC4 354-394 aa

XP_057810483.1

419 aa

210

419

zf-RING_2

zf-RING_11

zf-C3HC4

PF13639 zf-RING_2 353-395 aa PF17123 zf-RING_11 354-381 aa PF00097 zf-C3HC4 354-394 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810482.1`	Pfam	`PF13639`	zf-RING_2	Domain	353	395	1.6e-14	54.6	Ring finger domain
`XP_057810482.1`	Pfam	`PF17123`	zf-RING_11	Domain	354	381	3.7e-10	40.0	RING-like zinc finger
`XP_057810482.1`	Pfam	`PF00097`	zf-C3HC4	Domain	354	394	1.4e-06	28.8	Zinc finger, C3HC4 type (RING finger)
`XP_057810483.1`	Pfam	`PF13639`	zf-RING_2	Domain	353	395	1.6e-14	54.6	Ring finger domain
`XP_057810483.1`	Pfam	`PF17123`	zf-RING_11	Domain	354	381	3.7e-10	40.0	RING-like zinc finger
`XP_057810483.1`	Pfam	`PF00097`	zf-C3HC4	Domain	354	394	1.4e-06	28.8	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954499.1
AAAAGAAAGTTATACATATTATATATATAAACAGGAAAAAAGCGATATATATTATATTTTGGAAAAAGTGAAAAAAAAAACCAAAGGATTCAAAGCTTTCATCCGCAGAAAACTTCATCTGATTACCCTTTCCGTCAGACATTCGTTATTCGGATGCTGGGATTGTGTAATCTGGTTGAAGTTTCGAAAACTTGGGAGGATTAGGGTTTAACCGACTGCAATAACTTGTCTATTAAAGTTTGGGAAGAGTCTGAATACTA...

XM_057954500.1
CGCAGAAAACTTCATCTGATTACCCTTTCCGTCAGACATTCGTTATTCGGTCAGCAATTTTCCTTTCCCTTTTTTCTTCGTTCAGATAAATTGTCATTTTAGCGGCTGAAATACATGAATAATTTTAGGATGCTGGGATTGTGTAATCTGGTTGAAGTTTCGAAAACTTGGGAGGATTAGGGTTTAACCGACTGCAATAACTTGTCTATTAAAGTTTGGGAAGAGTCTGAATACTAGTCTGTCGTCCCATGTTTTCTCTG...

CDS

2 records

下载 CDS FASTA

LOC131024936
ATGGCTTTCCCCATTCTGGGACTTCATCGTAAGAGCCAAACAAGCAAAGTCCCTTTGTTGATGGAGCGTGCAGATACACGTATTGGTAGTGAACATGTTATTGACATTGCTAGTACCAGCGATGCTTCGTCCAGTTCATCACATGAAAGGCAGTCGAATGGCTTGGAGCGGCACCAAAGTGAAGATCAGCCATCTACTAGTTCAAGAGTTCCTGCATATCAACCTCAGCTCTTTTCTGGTGGACCAATTTCAAGAAACTC...

Protein

2 records

下载 Protein FASTA

XP_057810482.1
MAFPILGLHRKSQTSKVPLLMERADTRIGSEHVIDIASTSDASSSSSHERQSNGLERHQSEDQPSTSSRVPAYQPQLFSGGPISRNSSLIRRGNSRGRQRSPLNSGLWISVELVLTLSQIIAAIIVLSLSKHEKPHAPLRAWIVGYASGCFSILPLLYWRFRYRNQVSDLDASQSRVDPSQGNNNAGPSSRRVVEGEDRRTTSTTTRGNQSNGIPNARLKVFVEYFKMTLDCFFAVWFVVGNVWIFGGHSSSAEATNLYR...

XP_057810483.1
MAFPILGLHRKSQTSKVPLLMERADTRIGSEHVIDIASTSDASSSSSHERQSNGLERHQSEDQPSTSSRVPAYQPQLFSGGPISRNSSLIRRGNSRGRQRSPLNSGLWISVELVLTLSQIIAAIIVLSLSKHEKPHAPLRAWIVGYASGCFSILPLLYWRFRYRNQVSDLDASQSRVDPSQGNNNAGPSSRRVVEGEDRRTTSTTTRGNQSNGIPNARLKVFVEYFKMTLDCFFAVWFVVGNVWIFGGHSSSAEATNLYR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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