Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003898`

染色体: Chr05 坐标: 52742195-52747940 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003898`
名称	SmilChr05G003898
描述	uncharacterized SmilChr05G003898
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52742195 - 52747940 / `+`

ID 对照

NCBI Gene ID	`LOC131024896`
GeneID	`131024896`
locus_tag	`-`
NCBI Name	`LOC131024896`
原始查询	`SmilChr05G003898`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	SPOC domain / Transcription elongation factor S-II protein [Source:NCBI gene (formerly Entrezgene);Acc:831014]; symbol=AT5G11430; hit=AT5G11430; species=arabidopsis; confidence=medium
产物	SPOC domain / Transcription elongation factor S-II protein [Source:NCBI gene (formerly Entrezgene);Acc:831014]; symbol=AT5G11430; hit=AT5G11430; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G11430` (AT5G11430) SPOC domain / Transcription elongation factor S-II protein [Source:NCBI gene (formerly Entrezgene);Acc:831014] identity=39.9; qcov=0.829; evalue=2.26e-150; confidence=medium
Rice	`Os02g0208600` - identity=37.6; qcov=0.773; evalue=5.51e-147; confidence=medium
GO	GO:0005634 (nucleus); GO:0006351 (DNA-templated transcription)
KEGG	-
Pfam	PF07500 (TFIIS_M); PF07744 (SPOC)
InterPro	-
eggNOG	-
NR	GeneID:131024896

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810426.1`
2	Chromosome	染色体	0.00000	`XP_057810426.1`
3	Centromere	着丝粒	0.00000	`XP_057810426.1`
4	Chromatin	染色质	0.00000	`XP_057810426.1`
5	Telomere	端粒	0.00000	`XP_057810426.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52743888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr5:52744006`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr5:52744132`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B71
`Chr5:52744132`	`AC`	`A`	1bp_deletion	CDS_variant	1	B71
`Chr5:52744506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,A19,B11,C31
`Chr5:52745098`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr5:52745227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,B136,B66,C33
`Chr5:52745348`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr5:52745370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr5:52747016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr5:52747021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A11,B112,C19,C41,D10
`Chr5:52747034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B117,B19,B46,B59,B89

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810426.1

1046 aa

523

1046

TFIIS_M

SPOC

PF07500 TFIIS_M 369-448 aa PF07744 SPOC 685-831 aa

XP_057810427.1

1046 aa

523

1046

TFIIS_M

SPOC

PF07500 TFIIS_M 369-448 aa PF07744 SPOC 685-831 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810426.1`	Pfam	`PF07500`	TFIIS_M	Domain	369	448	2.4e-30	106.0	Transcription factor S-II (TFIIS), central domain
`XP_057810426.1`	Pfam	`PF07744`	SPOC	Domain	685	831	9.6e-30	104.2	SPOC domain
`XP_057810427.1`	Pfam	`PF07500`	TFIIS_M	Domain	369	448	2.4e-30	106.0	Transcription factor S-II (TFIIS), central domain
`XP_057810427.1`	Pfam	`PF07744`	SPOC	Domain	685	831	9.6e-30	104.2	SPOC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954444.1
GAGACCAATTATAAAAATTCTGTCAAATAAACAGTGATACATATAGGATAGATTTAAAGATAAGCATTTCAAACGCACCAGATGCACGAATCGATTATTCTAGGTTCGTAATCGTAGATAAGAAAGGACCAATCTCTCTGCTCCCTCTCTCCACAAATCCACGCATATTCGCTCAATCGACTGCTCCTCACTCCTAATTAGAGAGGCTGTTAATTTAGATGGAGCATGTTTCCCGCTCTATGGACTTTCCAGTACGTGGG...

XM_057954443.1
GTGATACATATAGGATAGATTTAAAGATAAGCATTTCAAACGCACCAGATGCACGAATCGATTATTCTAGGTTCGTAATCGTAGATAAGAAAGGACCAATCTCTCTGCTCCCTCTCTCCACAAATCCACGCATATTCGCTCAATCGACTGCTCCTCACTCCTAATTAGCTGTTGCTGGAGGCTCTGCTTAATATATTTCTAAAGCTAGTTTCCTTTGCATGTATCTTTCCCTGTTTCAGAGAGGCTGTTAATTTAGATGG...

CDS

2 records

下载 CDS FASTA

LOC131024896
ATGGAGCATGTTTCCCGCTCTATGGACTTTCCAGTACGTGGGGTGCATATGGAAATAGTACCAAACATGTCAAACTATCACGAATCACAGCATTTTAATGTGTCAATGGATCAAATGAGTTTTCTGGAGCCAGTATCATATGATTCTGAGTTCAATACTGTTATGATGGCAAACAACAATGCCGGACATGGGCAATCTACAGATGGTAGTGTGGAGTCAAGCTCCATCTTTTTGTCAAATCAGCCCGGACTTGATGATGC...

Protein

2 records

下载 Protein FASTA

XP_057810426.1
MEHVSRSMDFPVRGVHMEIVPNMSNYHESQHFNVSMDQMSFLEPVSYDSEFNTVMMANNNAGHGQSTDGSVESSSIFLSNQPGLDDATMLDSITGPVERKAEMEHTLNSSVSLQTQLPSERSVNLGAGNRPLGSVQPSESQRQPGPVQHSLGSPGSQAQSASSKRKVRPESIGKSGLQRGRPPKKQTAQIDSATKSQPESSDALRSKMRESLAAALALASQKLGNVSTGKKVKTEHTATHQMLVGGQSLESNSTMRGNVP...

XP_057810427.1
MEHVSRSMDFPVRGVHMEIVPNMSNYHESQHFNVSMDQMSFLEPVSYDSEFNTVMMANNNAGHGQSTDGSVESSSIFLSNQPGLDDATMLDSITGPVERKAEMEHTLNSSVSLQTQLPSERSVNLGAGNRPLGSVQPSESQRQPGPVQHSLGSPGSQAQSASSKRKVRPESIGKSGLQRGRPPKKQTAQIDSATKSQPESSDALRSKMRESLAAALALASQKLGNVSTGKKVKTEHTATHQMLVGGQSLESNSTMRGNVP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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