当前解析结果
SmilChr05G003899| 统一新 Gene ID | SmilChr05G003899 |
|---|---|
| 名称 | SmilChr05G003899 |
| 描述 | uncharacterized SmilChr05G003899 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 52748068 - 52749689 / - |
| NCBI Gene ID | LOC131024957 |
|---|---|
| GeneID | 131024957 |
| locus_tag | - |
| NCBI Name | LOC131024957 |
| 原始查询 | SmilChr05G003899 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:832628]; symbol=AT5G25530; hit=AT5G25530; species=arabidopsis; confidence=high |
| 产物 | DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:832628]; symbol=AT5G25530; hit=AT5G25530; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G25530 (AT5G25530)DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:832628] identity=67; qcov=1.14; evalue=4.68e-159; confidence=high |
| Rice | Os05g0562300 (OsDjB7)- identity=52.3; qcov=1.24; evalue=3.4e-128; confidence=high |
| GO | GO:0005829 (cytosol); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051087 (protein-folding chaperone binding) |
| KEGG | - |
| Pfam | PF00226 (DnaJ); PF01556 (DnaJ_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024957 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057810529.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057810529.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057810529.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810529.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810529.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:52748220 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr5:52748459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr5:52748486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,C87 |
Chr5:52748495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,A22 |
Chr5:52749190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B53,C2 |
Chr5:52749379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B33,B77,C87 |
Chr5:52749400 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810529.1PF00226
DnaJ 4-67 aa
PF01556
DnaJ_C 123-280 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810529.1 |
Pfam | PF00226 |
DnaJ | Domain | 4 | 67 | 9.6e-30 | 103.2 | DnaJ domain |
XP_057810529.1 |
Pfam | PF01556 |
DnaJ_C | Domain | 123 | 280 | 7.3e-38 | 130.7 | DnaJ C terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。