Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003902`

染色体: Chr05 坐标: 52763843-52768973 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003902`
名称	SmilChr05G003902
描述	syntaxin-32-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52763843 - 52768973 / `-`

ID 对照

NCBI Gene ID	`LOC131024948`
GeneID	`131024948`
locus_tag	`-`
NCBI Name	`LOC131024948`
原始查询	`SmilChr05G003902`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	syntaxin-32-like
产物	syntaxin-32-like
Arabidopsis	`AT3G24350` (SYP32) syntaxin of plants 32 [Source:NCBI gene (formerly Entrezgene);Acc:822024] identity=73.5; qcov=0.978; evalue=9.44e-127; confidence=high
Rice	`Os01g0179200` - identity=71; qcov=0.982; evalue=1.72e-127; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0000149 (SNARE binding); GO:0005484 (SNAP receptor activity); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006906 (vesicle fusion); GO:0012505 (endomembrane system); GO:0031201 (SNARE complex); GO:0048278 (GO:0048278)
KEGG	smil04130 (SNARE interactions in vesicular transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF05739 (SNARE); PF11416 (Syntaxin-5_N)
InterPro	-
eggNOG	-
NR	GeneID:131024948

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057810507.1`
2	Trans-golgi network	Trans-golgi network	0.60000	`XP_057810507.1`
3	Golgi stack	高尔基堆	0.20000	`XP_057810507.1`
4	Vesicle	囊泡	0.20000	`XP_057810507.1`
5	Nucleus	细胞核	0.00000	`XP_057810508.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52764681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr5:52764751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B90,C55
`Chr5:52764766`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr5:52764778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A3,B105
`Chr5:52764856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:52765102`	`TC`	`T`	1bp_deletion	frameshift_variant	1	A19
`Chr5:52765102`	`TC`	`T`	1bp_deletion	CDS_variant	1	A19
`Chr5:52765112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr5:52765169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B39,B91
`Chr5:52765249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810507.1

340 aa

170

340

Syntaxin-5_N

SNARE

PF11416 Syntaxin-5_N 6-26 aa PF05739 SNARE 250-327 aa

XP_057810508.1

274 aa

137

274

SNARE

PF05739 SNARE 184-261 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810507.1`	Pfam	`PF11416`	Syntaxin-5_N	Family	6	26	1e-07	31.7	Syntaxin-5 N-terminal, Sly1p-binding domain
`XP_057810507.1`	Pfam	`PF05739`	SNARE	Domain	250	327	3.4e-25	88.4	SNARE domain
`XP_057810508.1`	Pfam	`PF05739`	SNARE	Domain	184	261	2.3e-25	89.0	SNARE domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954524.1
ATTTTAAGTCGAGTTGTAATGGAGTATAATTCAGACATAATTTTCGAAAAAAAAATATATAATTCAGACTTATAGTAATTTAACAAAATTCAGGGTTTAAGATCAGCCAAAATTCCCCCAATTCGTGCCCACAGTCTCTCAAGAATTCAGGGGCAATAAATCGCCGCTGGCATTTATGTAACCGCGGCGTTGAAAATCCGAGCTGCGAAAGATGCTGGTGAAGAGCGGGAATGCATCGATTAGGGATCGGACACAGGAGT...

XM_057954525.1
AGCTAAGCTGGCAAAATGTGGGTCAAAGTTAACATGACGACTTCTACTGTAGTGGCAAAGAGGAGTTCAGTATTTGATGACCCTACCATGGAAATCCAGGAGCTAACTGCACTTATTAAGCAAGATATAACGGCTCTTAATTCTGCAGTAGTTGATCTACAGTTACTCAGCAATTCACGTAATGAAAGTGCGCAGACATCCACCGACAACACAACTCATTCAACTACAGTTGTTGATGATTTGAAGAATCGTTTGATGAG...

CDS

2 records

下载 CDS FASTA

LOC131024948
ATGCTGGTGAAGAGCGGGAATGCATCGATTAGGGATCGGACACAGGAGTTCTTAGGGATAGCGGAGAGGGTGAAGAAGCCACTGTCGTCACAGAATGGGCCGAGCAGCAGTGGGTCGAAGCCGTCGGAGCCGCCGCGGTCGGCTATGGCTATGCAATCCGAGTTCAATCGGAGGGCGTCGAAAATTGGGTTCGGGATTCACCAGACTTCTCAGAAGCTAGCTAAGCTGGCAAAATTGGCAAAGAGGAGTTCAGTATTTGA...

LOC131024948
ATGTGGGTCAAAGTTAACATGACGACTTCTACTGTAGTGGCAAAGAGGAGTTCAGTATTTGATGACCCTACCATGGAAATCCAGGAGCTAACTGCACTTATTAAGCAAGATATAACGGCTCTTAATTCTGCAGTAGTTGATCTACAGTTACTCAGCAATTCACGTAATGAAAGTGCGCAGACATCCACCGACAACACAACTCATTCAACTACAGTTGTTGATGATTTGAAGAATCGTTTGATGAGCACAACACAGGAGTT...

Protein

2 records

下载 Protein FASTA

XP_057810507.1
MLVKSGNASIRDRTQEFLGIAERVKKPLSSQNGPSSSGSKPSEPPRSAMAMQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRSSVFDDPTMEIQELTALIKQDITALNSAVVDLQLLSNSRNESAQTSTDNTTHSTTVVDDLKNRLMSTTQEFKDVLTMRTENLKVHENRRQLFSSSASKNATNPFIRQRPLAAKSAATTSAAPPLPWGSGGESSSQMFPKSQVDGESQPLLQQQQNQQQQQLAPLQDSYMQSRAEALQN...

XP_057810508.1
MWVKVNMTTSTVVAKRSSVFDDPTMEIQELTALIKQDITALNSAVVDLQLLSNSRNESAQTSTDNTTHSTTVVDDLKNRLMSTTQEFKDVLTMRTENLKVHENRRQLFSSSASKNATNPFIRQRPLAAKSAATTSAAPPLPWGSGGESSSQMFPKSQVDGESQPLLQQQQNQQQQQLAPLQDSYMQSRAEALQNVESTIHELSSIFNQLATLVSQQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMMKIFF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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