Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003904`

染色体: Chr05 坐标: 52787753-52792497 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003904`
名称	SmilChr05G003904
描述	probable E3 ubiquitin-protein ligase RZFP34
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52787753 - 52792497 / `+`

ID 对照

NCBI Gene ID	`LOC131024953`
GeneID	`131024953`
locus_tag	`-`
NCBI Name	`LOC131024953`
原始查询	`SmilChr05G003904`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase RZFP34
产物	probable E3 ubiquitin-protein ligase RZFP34
Arabidopsis	`AT5G25560` (AT5G25560) CHY-type/CTCHY-type/RING-type Zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:832631] identity=73.7; qcov=0.904; evalue=4.38e-153; confidence=high
Rice	`Os01g0719100` (OsRZFP34) - identity=73.6; qcov=0.838; evalue=4.45e-142; confidence=high
GO	GO:0005634 (nucleus); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00097 (zf-C3HC4); PF05495 (zf-CHY); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF14599 (zinc_ribbon_6); PF14634 (zf-RING_5)
InterPro	-
eggNOG	-
NR	GeneID:131024953

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810515.1`
2	Cytoplasm	细胞质	1.00000	`XP_057810515.1`
3	Cytosol	细胞质基质	0.80000	`XP_057810515.1`
4	Nucleoplasm	核质	0.60000	`XP_057810518.1`
5	Chromosome	染色体	0.00000	`XP_057810515.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52790248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B13,B43,B99,C87
`Chr5:52790334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B19,B59,B89
`Chr5:52790363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82
`Chr5:52790503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,B131
`Chr5:52791831`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C75
`Chr5:52791831`	`GC`	`G`	1bp_deletion	CDS_variant	1	C75
`Chr5:52791995`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B114,B123,B127,B27,C49
`Chr5:52792239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810515.1

304 aa

152

304

zf-CHY

zf-RING_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zinc_ribbon_6

PF05495 zf-CHY 55-129 aa PF13639 zf-RING_2 190-234 aa PF14634 zf-RING_5 190-236 aa PF13445 zf-RING_UBOX 191-232 aa PF00097 zf-C3HC4 191-234 aa PF14599 zinc_ribbon_6 239-297 aa

XP_057810516.1

304 aa

152

304

zf-CHY

zf-RING_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zinc_ribbon_6

PF05495 zf-CHY 55-129 aa PF13639 zf-RING_2 190-234 aa PF14634 zf-RING_5 190-236 aa PF13445 zf-RING_UBOX 191-232 aa PF00097 zf-C3HC4 191-234 aa PF14599 zinc_ribbon_6 239-297 aa

XP_057810517.1

304 aa

152

304

zf-CHY

zf-RING_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zinc_ribbon_6

PF05495 zf-CHY 55-129 aa PF13639 zf-RING_2 190-234 aa PF14634 zf-RING_5 190-236 aa PF13445 zf-RING_UBOX 191-232 aa PF00097 zf-C3HC4 191-234 aa PF14599 zinc_ribbon_6 239-297 aa

XP_057810518.1

303 aa

152

303

zf-CHY

zf-RING_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zinc_ribbon_6

PF05495 zf-CHY 55-129 aa PF13639 zf-RING_2 190-233 aa PF14634 zf-RING_5 190-235 aa PF13445 zf-RING_UBOX 191-231 aa PF00097 zf-C3HC4 191-233 aa PF14599 zinc_ribbon_6 238-296 aa

XP_057810519.1

303 aa

152

303

zf-CHY

zf-RING_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zinc_ribbon_6

PF05495 zf-CHY 55-129 aa PF13639 zf-RING_2 190-233 aa PF14634 zf-RING_5 190-235 aa PF13445 zf-RING_UBOX 191-231 aa PF00097 zf-C3HC4 191-233 aa PF14599 zinc_ribbon_6 238-296 aa

XP_057810520.1

303 aa

152

303

zf-CHY

zf-RING_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zinc_ribbon_6

PF05495 zf-CHY 55-129 aa PF13639 zf-RING_2 190-233 aa PF14634 zf-RING_5 190-235 aa PF13445 zf-RING_UBOX 191-231 aa PF00097 zf-C3HC4 191-233 aa PF14599 zinc_ribbon_6 238-296 aa

XP_057810521.1

303 aa

152

303

zf-CHY

zf-RING_2

zf-RING_5

zf-RING_UBOX

zf-C3HC4

zinc_ribbon_6

PF05495 zf-CHY 55-129 aa PF13639 zf-RING_2 190-233 aa PF14634 zf-RING_5 190-235 aa PF13445 zf-RING_UBOX 191-231 aa PF00097 zf-C3HC4 191-233 aa PF14599 zinc_ribbon_6 238-296 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810515.1`	Pfam	`PF05495`	zf-CHY	Domain	55	129	9e-19	68.4	CHY zinc finger
`XP_057810515.1`	Pfam	`PF13639`	zf-RING_2	Domain	190	234	1.1e-08	35.9	Ring finger domain
`XP_057810515.1`	Pfam	`PF14634`	zf-RING_5	Domain	190	236	2.1e-07	31.5	zinc-RING finger domain
`XP_057810515.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	191	232	4.1e-08	33.8	RING-type zinc-finger
`XP_057810515.1`	Pfam	`PF00097`	zf-C3HC4	Domain	191	234	1.5e-06	28.7	Zinc finger, C3HC4 type (RING finger)
`XP_057810515.1`	Pfam	`PF14599`	zinc_ribbon_6	Domain	239	297	3.7e-25	88.4	Zinc-ribbon
`XP_057810516.1`	Pfam	`PF05495`	zf-CHY	Domain	55	129	9e-19	68.4	CHY zinc finger
`XP_057810516.1`	Pfam	`PF13639`	zf-RING_2	Domain	190	234	1.1e-08	35.9	Ring finger domain
`XP_057810516.1`	Pfam	`PF14634`	zf-RING_5	Domain	190	236	2.1e-07	31.5	zinc-RING finger domain
`XP_057810516.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	191	232	4.1e-08	33.8	RING-type zinc-finger
`XP_057810516.1`	Pfam	`PF00097`	zf-C3HC4	Domain	191	234	1.5e-06	28.7	Zinc finger, C3HC4 type (RING finger)
`XP_057810516.1`	Pfam	`PF14599`	zinc_ribbon_6	Domain	239	297	3.7e-25	88.4	Zinc-ribbon
`XP_057810517.1`	Pfam	`PF05495`	zf-CHY	Domain	55	129	9e-19	68.4	CHY zinc finger
`XP_057810517.1`	Pfam	`PF13639`	zf-RING_2	Domain	190	234	1.1e-08	35.9	Ring finger domain
`XP_057810517.1`	Pfam	`PF14634`	zf-RING_5	Domain	190	236	2.1e-07	31.5	zinc-RING finger domain
`XP_057810517.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	191	232	4.1e-08	33.8	RING-type zinc-finger
`XP_057810517.1`	Pfam	`PF00097`	zf-C3HC4	Domain	191	234	1.5e-06	28.7	Zinc finger, C3HC4 type (RING finger)
`XP_057810517.1`	Pfam	`PF14599`	zinc_ribbon_6	Domain	239	297	3.7e-25	88.4	Zinc-ribbon
`XP_057810518.1`	Pfam	`PF05495`	zf-CHY	Domain	55	129	7.5e-19	68.6	CHY zinc finger
`XP_057810518.1`	Pfam	`PF13639`	zf-RING_2	Domain	190	233	4.8e-09	37.1	Ring finger domain
`XP_057810518.1`	Pfam	`PF14634`	zf-RING_5	Domain	190	235	2.6e-07	31.2	zinc-RING finger domain
`XP_057810518.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	191	231	6.8e-08	33.1	RING-type zinc-finger
`XP_057810518.1`	Pfam	`PF00097`	zf-C3HC4	Domain	191	233	1.5e-06	28.6	Zinc finger, C3HC4 type (RING finger)
`XP_057810518.1`	Pfam	`PF14599`	zinc_ribbon_6	Domain	238	296	3.6e-25	88.4	Zinc-ribbon
`XP_057810519.1`	Pfam	`PF05495`	zf-CHY	Domain	55	129	7.5e-19	68.6	CHY zinc finger
`XP_057810519.1`	Pfam	`PF13639`	zf-RING_2	Domain	190	233	4.8e-09	37.1	Ring finger domain
`XP_057810519.1`	Pfam	`PF14634`	zf-RING_5	Domain	190	235	2.6e-07	31.2	zinc-RING finger domain
`XP_057810519.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	191	231	6.8e-08	33.1	RING-type zinc-finger
`XP_057810519.1`	Pfam	`PF00097`	zf-C3HC4	Domain	191	233	1.5e-06	28.6	Zinc finger, C3HC4 type (RING finger)
`XP_057810519.1`	Pfam	`PF14599`	zinc_ribbon_6	Domain	238	296	3.6e-25	88.4	Zinc-ribbon
`XP_057810520.1`	Pfam	`PF05495`	zf-CHY	Domain	55	129	7.5e-19	68.6	CHY zinc finger
`XP_057810520.1`	Pfam	`PF13639`	zf-RING_2	Domain	190	233	4.8e-09	37.1	Ring finger domain
`XP_057810520.1`	Pfam	`PF14634`	zf-RING_5	Domain	190	235	2.6e-07	31.2	zinc-RING finger domain
`XP_057810520.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	191	231	6.8e-08	33.1	RING-type zinc-finger
`XP_057810520.1`	Pfam	`PF00097`	zf-C3HC4	Domain	191	233	1.5e-06	28.6	Zinc finger, C3HC4 type (RING finger)
`XP_057810520.1`	Pfam	`PF14599`	zinc_ribbon_6	Domain	238	296	3.6e-25	88.4	Zinc-ribbon
`XP_057810521.1`	Pfam	`PF05495`	zf-CHY	Domain	55	129	7.5e-19	68.6	CHY zinc finger
`XP_057810521.1`	Pfam	`PF13639`	zf-RING_2	Domain	190	233	4.8e-09	37.1	Ring finger domain
`XP_057810521.1`	Pfam	`PF14634`	zf-RING_5	Domain	190	235	2.6e-07	31.2	zinc-RING finger domain
`XP_057810521.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	191	231	6.8e-08	33.1	RING-type zinc-finger
`XP_057810521.1`	Pfam	`PF00097`	zf-C3HC4	Domain	191	233	1.5e-06	28.6	Zinc finger, C3HC4 type (RING finger)
`XP_057810521.1`	Pfam	`PF14599`	zinc_ribbon_6	Domain	238	296	3.6e-25	88.4	Zinc-ribbon

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057954532.1
CCGAATTCTCTAGAAAAGTCAAGGAAAGAAAATTCAGAAAGCAACCCTTTCAGCTGTCTGAGCCTTTGCTTTCAATCCAAATCACCCATTTTTTGTCTCCATTCATTGTATGCATGCCACGCCACCCTCAAACCCACATCCCATCATTCATTTTTTCAATAAAAACTGATTTTTTTTCGCCTTCTTCAATCTATATACATCGTTGAATTGTGTGTTTATCGCTCTACTCGGTTTCTCTCTCTCTTCTCTCTCATATTTTG...

XM_057954535.1
CCGAATTCTCTAGAAAAGTCAAGGAAAGAAAATTCAGAAAGCAACCCTTTCAGCTGTCTGAGCCTTTGCTTTCAATCCAAATCACCCATTTTTTGTCTCCATTCATTGTATGCATGCCACGCCACCCTCAAACCCACATCCCATCATTCATTTTTTCAATAAAAACTGATTTTTTTTCGCCTTCTTCAATCTATATACATCGTTGAATTGTGTGTTTATCGCTCTACTCGGTTTCTCTCTCTCTTCTCTCTCATATTTTG...

CDS

7 records

下载 CDS FASTA

LOC131024953
ATGGCGTCTGCGGCTGTTGAATATTCTGGCACAACATGTGTCGAGCGTTGTGATTTGGAACTGCAGCGTTCGCATGAAGAACACATTGCAGAGAATGAGCTGACGACCCTGGGAAAGATCGCTGGTACTGAAAGATTAGATGAAGGGCACATGCAATACGGATGTTCCCACTATCGTCGGAGGTGTCGCATTAGAGCTCCGTGTTGTAATGAGATCTTCAGTTGCCGTCACTGTCATAATGAGGCAAAGAATAGTATTAG...

Protein

7 records

下载 Protein FASTA

XP_057810515.1
MASAAVEYSGTTCVERCDLELQRSHEEHIAENELTTLGKIAGTERLDEGHMQYGCSHYRRRCRIRAPCCNEIFSCRHCHNEAKNSISIEQKLRHDIPRHSVEKVICSLCDTEQEARQVCENCGVCMGRYFCGICKLFDDDTSKEQYHCNGCGICRIGGSKNFFHCNKCGCCYSALLKSSHPCVERAMHQDCPVCFEYLFESRNDVIALPCGHTIHKACLEEMQEHYHRYACPICSKSVCDMSKVWEKFDLEIAATPMPPY...

XP_057810516.1
MASAAVEYSGTTCVERCDLELQRSHEEHIAENELTTLGKIAGTERLDEGHMQYGCSHYRRRCRIRAPCCNEIFSCRHCHNEAKNSISIEQKLRHDIPRHSVEKVICSLCDTEQEARQVCENCGVCMGRYFCGICKLFDDDTSKEQYHCNGCGICRIGGSKNFFHCNKCGCCYSALLKSSHPCVERAMHQDCPVCFEYLFESRNDVIALPCGHTIHKACLEEMQEHYHRYACPICSKSVCDMSKVWEKFDLEIAATPMPPY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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