当前解析结果
SmilChr05G003917| 统一新 Gene ID | SmilChr05G003917 |
|---|---|
| 名称 | SmilChr05G003917 |
| 描述 | homeobox protein BEL1 homolog |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 52905784 - 52908703 / + |
| NCBI Gene ID | LOC131024922 |
|---|---|
| GeneID | 131024922 |
| locus_tag | - |
| NCBI Name | LOC131024922 |
| 原始查询 | SmilChr05G003917 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | homeobox protein BEL1 homolog |
| 产物 | homeobox protein BEL1 homolog |
| Arabidopsis | AT5G41410 (BEL1)POX (plant homeobox) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834143] identity=42.2; qcov=1.06; evalue=1.63e-118; confidence=medium |
| Rice | Os10g0534900- identity=44.9; qcov=0.847; evalue=1.28e-108; confidence=medium |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF05920 (Homeobox_KN); PF07526 (POX) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024922 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810465.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057810465.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057810465.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057810465.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057810465.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:52906344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,B24 |
Chr5:52906526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr5:52906550 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A25,A8,B65,D1 |
Chr5:52906564 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A16,B112,B118,B29,B66,B72,B79,C13,C33 |
Chr5:52906568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,C14 |
Chr5:52906571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr5:52906612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:52906625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B50,C14,C42 |
Chr5:52906626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B50,C14,C42,D11 |
Chr5:52906679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B50,C14,D11 |
Chr5:52906710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C14 |
Chr5:52906712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B50,C14,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810465.1PF07526
POX 141-256 aa
PF05920
Homeobox_KN 326-365 aa
PF00046
Homeodomain 333-365 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810465.1 |
Pfam | PF07526 |
POX | Domain | 141 | 256 | 7.6e-40 | 137.3 | Associated with HOX |
XP_057810465.1 |
Pfam | PF05920 |
Homeobox_KN | Family | 326 | 365 | 1.1e-19 | 70.7 | Homeobox KN domain |
XP_057810465.1 |
Pfam | PF00046 |
Homeodomain | Domain | 333 | 365 | 9.2e-07 | 29.3 | Homeodomain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。