当前解析结果
SmilChr05G003921| 统一新 Gene ID | SmilChr05G003921 |
|---|---|
| 名称 | SmilChr05G003921 |
| 描述 | uncharacterized SmilChr05G003921 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 52968814 - 52969839 / - |
| NCBI Gene ID | LOC131026109 |
|---|---|
| GeneID | 131026109 |
| locus_tag | - |
| NCBI Name | LOC131026109 |
| 原始查询 | SmilChr05G003921 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0587600; species=rice; confidence=weak |
| 产物 | hit=Os03g0587600; species=rice; confidence=weak |
| Arabidopsis | -- |
| Rice | Os03g0587600- identity=45.8; qcov=0.141; evalue=2.5e-06; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026109 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057811862.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057811862.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057811862.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057811862.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057811862.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:52968834 |
TG |
T |
1bp_deletion | frameshift_variant | 4 | B106,B8,C58,D6 |
Chr5:52968834 |
TG |
T |
1bp_deletion | CDS_variant | 4 | B106,B8,C58,D6 |
Chr5:52968848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C35 |
Chr5:52968864 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B1,B126,B71,C2 |
Chr5:52968864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B126,B71,C2 |
Chr5:52968877 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C14 |
Chr5:52968877 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C14 |
Chr5:52968901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C3,C46 |
Chr5:52968933 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,B102,B93,C56,D8 |
Chr5:52968961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,B65 |
Chr5:52968966 |
CT |
C |
1bp_deletion | frameshift_variant | 2 | B79,B85 |
Chr5:52968966 |
CT |
C |
1bp_deletion | CDS_variant | 2 | B79,B85 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。