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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003927

染色体: Chr05 坐标: 53023156-53026236 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003927
名称SmilChr05G003927
描述pentatricopeptide repeat-containing protein At4g02750-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向53023156 - 53026236 / -

ID 对照

NCBI Gene IDLOC131024920
GeneID131024920
locus_tag-
NCBI NameLOC131024920
原始查询SmilChr05G003927

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At4g02750-like
产物pentatricopeptide repeat-containing protein At4g02750-like
ArabidopsisAT4G02750 (AT4G02750)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828187]
identity=49.3; qcov=0.955; evalue=0; confidence=high
RiceOs09g0327200 (P0706E03.7)
-
identity=47.1; qcov=0.959; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131024920

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057810463.1
2 Nucleus 细胞核 0.00000 XP_057810463.1
3 Chromosome 染色体 0.00000 XP_057810463.1
4 Centromere 着丝粒 0.00000 XP_057810463.1
5 Chromatin 染色质 0.00000 XP_057810463.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:53024138 G A EMS_canonical_SNV CDS_variant 1 A21
Chr5:53024161 C T EMS_canonical_SNV CDS_variant 1 D11
Chr5:53024170 G A EMS_canonical_SNV CDS_variant 1 D11
Chr5:53024187 G A EMS_canonical_SNV CDS_variant 3 A25,A9,C23
Chr5:53024191 G A EMS_canonical_SNV CDS_variant 5 A11,A5,B30,C6,C83
Chr5:53024452 G A EMS_canonical_SNV CDS_variant 1 C82
Chr5:53024601 C CT 1bp_insertion frameshift_variant 1 C21
Chr5:53024601 C CT 1bp_insertion CDS_variant 1 C21
Chr5:53024653 AGT A 2bp_deletion frameshift_variant 58 A11,A13,A16,A19,A20,A23,A3,A7,B10,B103,B108,B11,B136,B138,B139,B140,B15,B17,B2,B24,B29,B31,B33,B40,B47,B50,B51,B58,B69,B76,B83,B84,B88,B93,B94,B95,C11,C17,C2,C20,C21,C26,C27,C28,C31,C4,C47,C5,C52,C53,C54,C69,C75,C76,C77,C8,D3,D6
Chr5:53024658 T TCC 2bp_insertion frameshift_variant 58 A11,A13,A16,A19,A20,A23,A3,A7,B10,B103,B108,B11,B136,B138,B139,B140,B15,B17,B2,B24,B29,B31,B33,B40,B47,B50,B51,B58,B69,B76,B83,B84,B88,B93,B94,B95,C11,C17,C2,C20,C21,C26,C27,C28,C31,C4,C47,C5,C52,C53,C54,C69,C75,C76,C77,C8,D3,D6
Chr5:53024694 TC T 1bp_deletion frameshift_variant 6 A15,A8,B3,B46,B81,C56
Chr5:53024701 G A EMS_canonical_SNV CDS_variant 1 B109

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810463.1
558 aa
N
1
279
558
PPR_1
PPR
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR
PPR_1
PPR
E_motif
PPR
DYW_deaminase
C
PF12854 PPR_1 97-123 aa PF01535 PPR 98-127 aa PF01535 PPR 160-189 aa PF13041 PPR_2 188-220 aa PF12854 PPR_1 189-216 aa PF01535 PPR 191-219 aa PF13041 PPR_2 219-252 aa PF12854 PPR_1 220-247 aa PF01535 PPR 222-251 aa PF13041 PPR_2 250-298 aa PF01535 PPR 253-281 aa PF12854 PPR_1 318-349 aa PF01535 PPR 325-349 aa PF20431 E_motif 368-430 aa PF01535 PPR 391-420 aa PF14432 DYW_deaminase 466-558 aa
XP_057810464.1
558 aa
N
1
279
558
PPR_1
PPR
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR
PPR_1
PPR
E_motif
PPR
DYW_deaminase
C
PF12854 PPR_1 97-123 aa PF01535 PPR 98-127 aa PF01535 PPR 160-189 aa PF13041 PPR_2 188-220 aa PF12854 PPR_1 189-216 aa PF01535 PPR 191-219 aa PF13041 PPR_2 219-252 aa PF12854 PPR_1 220-247 aa PF01535 PPR 222-251 aa PF13041 PPR_2 250-298 aa PF01535 PPR 253-281 aa PF12854 PPR_1 318-349 aa PF01535 PPR 325-349 aa PF20431 E_motif 368-430 aa PF01535 PPR 391-420 aa PF14432 DYW_deaminase 466-558 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810463.1 Pfam PF12854 PPR_1 Repeat 97 123 2.3e-50 168.7 PPR repeat
XP_057810463.1 Pfam PF01535 PPR Repeat 98 127 6.3e-65 211.7 PPR repeat
XP_057810463.1 Pfam PF01535 PPR Repeat 160 189 6.3e-65 211.7 PPR repeat
XP_057810463.1 Pfam PF13041 PPR_2 Repeat 188 220 2.5e-62 207.5 PPR repeat family
XP_057810463.1 Pfam PF12854 PPR_1 Repeat 189 216 2.3e-50 168.7 PPR repeat
XP_057810463.1 Pfam PF01535 PPR Repeat 191 219 6.3e-65 211.7 PPR repeat
XP_057810463.1 Pfam PF13041 PPR_2 Repeat 219 252 2.5e-62 207.5 PPR repeat family
XP_057810463.1 Pfam PF12854 PPR_1 Repeat 220 247 2.3e-50 168.7 PPR repeat
XP_057810463.1 Pfam PF01535 PPR Repeat 222 251 6.3e-65 211.7 PPR repeat
XP_057810463.1 Pfam PF13041 PPR_2 Repeat 250 298 2.5e-62 207.5 PPR repeat family
XP_057810463.1 Pfam PF01535 PPR Repeat 253 281 6.3e-65 211.7 PPR repeat
XP_057810463.1 Pfam PF12854 PPR_1 Repeat 318 349 2.3e-50 168.7 PPR repeat
XP_057810463.1 Pfam PF01535 PPR Repeat 325 349 6.3e-65 211.7 PPR repeat
XP_057810463.1 Pfam PF20431 E_motif Repeat 368 430 9.4e-16 58.5 E motif
XP_057810463.1 Pfam PF01535 PPR Repeat 391 420 6.3e-65 211.7 PPR repeat
XP_057810463.1 Pfam PF14432 DYW_deaminase Domain 466 558 2e-37 127.6 DYW family of nucleic acid deaminases
XP_057810464.1 Pfam PF12854 PPR_1 Repeat 97 123 2.3e-50 168.7 PPR repeat
XP_057810464.1 Pfam PF01535 PPR Repeat 98 127 6.3e-65 211.7 PPR repeat
XP_057810464.1 Pfam PF01535 PPR Repeat 160 189 6.3e-65 211.7 PPR repeat
XP_057810464.1 Pfam PF13041 PPR_2 Repeat 188 220 2.5e-62 207.5 PPR repeat family
XP_057810464.1 Pfam PF12854 PPR_1 Repeat 189 216 2.3e-50 168.7 PPR repeat
XP_057810464.1 Pfam PF01535 PPR Repeat 191 219 6.3e-65 211.7 PPR repeat
XP_057810464.1 Pfam PF13041 PPR_2 Repeat 219 252 2.5e-62 207.5 PPR repeat family
XP_057810464.1 Pfam PF12854 PPR_1 Repeat 220 247 2.3e-50 168.7 PPR repeat
XP_057810464.1 Pfam PF01535 PPR Repeat 222 251 6.3e-65 211.7 PPR repeat
XP_057810464.1 Pfam PF13041 PPR_2 Repeat 250 298 2.5e-62 207.5 PPR repeat family
XP_057810464.1 Pfam PF01535 PPR Repeat 253 281 6.3e-65 211.7 PPR repeat
XP_057810464.1 Pfam PF12854 PPR_1 Repeat 318 349 2.3e-50 168.7 PPR repeat
XP_057810464.1 Pfam PF01535 PPR Repeat 325 349 6.3e-65 211.7 PPR repeat
XP_057810464.1 Pfam PF20431 E_motif Repeat 368 430 9.4e-16 58.5 E motif
XP_057810464.1 Pfam PF01535 PPR Repeat 391 420 6.3e-65 211.7 PPR repeat
XP_057810464.1 Pfam PF14432 DYW_deaminase Domain 466 558 2e-37 127.6 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057954481.1
TTATAATCTAGATCTCACTTTTTCATCAGTCCGTTCTAGCGGAGGGAAGAAAGCCTAATTCCCAAATCTCCATAATCGGCATGTCGCTGCTGCTCCGACGCAATCTGCTTCCCTCTTTGCTCTCTTCAGCGCAGGGGTTTTCTCATTCCATGCGTTTCAGACATCTTCATAGAACAATAACTGATGGGCAGCGTCAAAATACTAGCCAACTCTTCGAACCACCCGCCAATAAGCCGCCGGCGAGGCCTAGCAGCAGCGAT...
XM_057954480.1
TTATAATCTAGATCTCACTTTTTCATCAGTCCGTTCTAGCGGAGGGAAGAAAGCCTAATTCCCAAATCTCCATAATCGGCATGTCGCTGCTGCTCCGACGCAATCTGCTTCCCTCTTTGCTCTCTTCAGCGCAGGGGTTTTCTCATTCCATGCGTTTCAGACATCTTCATAGAACAATAACTGATGGGCAGCGTCAAAATACTAGCCAACTCTTCGAACCACCCGCCAATAAGCCGCCGGCGAGGCCTAGCAGCAGCGAT...

CDS

2 records

下载 CDS FASTA
LOC131024920
ATGTCGCTGCTGCTCCGACGCAATCTGCTTCCCTCTTTGCTCTCTTCAGCGCAGGGGTTTTCTCATTCCATGCGTTTCAGACATCTTCATAGAACAATAACTGATGGGCAGCGTCAAAATACTAGCCAACTCTTCGAACCACCCGCCAATAAGCCGCCGGCGAGGCCTAGCAGCAGCGATTTTACACACTCTGACATGGTGAAATGCACAATAGCTATCAGACACCACATGCGCAAGGGCCAATGCGACACCGCGTTGCT...
LOC131024920
ATGTCGCTGCTGCTCCGACGCAATCTGCTTCCCTCTTTGCTCTCTTCAGCGCAGGGGTTTTCTCATTCCATGCGTTTCAGACATCTTCATAGAACAATAACTGATGGGCAGCGTCAAAATACTAGCCAACTCTTCGAACCACCCGCCAATAAGCCGCCGGCGAGGCCTAGCAGCAGCGATTTTACACACTCTGACATGGTGAAATGCACAATAGCTATCAGACACCACATGCGCAAGGGCCAATGCGACACCGCGTTGCT...

Protein

2 records

下载 Protein FASTA
XP_057810463.1
MSLLLRRNLLPSLLSSAQGFSHSMRFRHLHRTITDGQRQNTSQLFEPPANKPPARPSSSDFTHSDMVKCTIAIRHHMRKGQCDTALLLFNSMPRRSEVTYGTMISGYFSNGESNMAQQLFDEMPVKNLVSQCIMMKWNIKYNNLKAARLLFDELPVKDVVAWTTILTGYIQNGLMDEGKRIFDKMPDKDVFSWNTILSGYIQNGLLDEAMRVFDEMPVKNAVSWNTILSGYMQNGLLDKAKSVFDEMPVKNVVSWTTIII...
XP_057810464.1
MSLLLRRNLLPSLLSSAQGFSHSMRFRHLHRTITDGQRQNTSQLFEPPANKPPARPSSSDFTHSDMVKCTIAIRHHMRKGQCDTALLLFNSMPRRSEVTYGTMISGYFSNGESNMAQQLFDEMPVKNLVSQCIMMKWNIKYNNLKAARLLFDELPVKDVVAWTTILTGYIQNGLMDEGKRIFDKMPDKDVFSWNTILSGYIQNGLLDEAMRVFDEMPVKNAVSWNTILSGYMQNGLLDKAKSVFDEMPVKNVVSWTTIII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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