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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003961

染色体: Chr05 坐标: 53341027-53349369 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003961
名称SmilChr05G003961
描述uncharacterized SmilChr05G003961
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向53341027 - 53349369 / +

ID 对照

NCBI Gene IDLOC131025028
GeneID131025028
locus_tag-
NCBI NameLOC131025028
原始查询SmilChr05G003961

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述KOW domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832419]; symbol=AT5G23535; hit=AT5G23535; species=arabidopsis; confidence=high
产物KOW domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832419]; symbol=AT5G23535; hit=AT5G23535; species=arabidopsis; confidence=high
ArabidopsisAT5G23535 (AT5G23535)
KOW domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832419]
identity=83; qcov=0.778; evalue=1.18e-64; confidence=high
RiceOs12g0135900
-
identity=80.4; qcov=0.778; evalue=1.61e-63; confidence=high
GOGO:0003723 (RNA binding); GO:0003735 (structural constituent of ribosome); GO:0005739 (mitochondrion); GO:0005840 (ribosome); GO:0006412 (translation)
KEGGsmil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
PfamPF00467 (KOW); PF17136 (ribosomal_L24)
InterPro-
eggNOG-
NRGeneID:131025028

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057810591.1
2 Cytosol 细胞质基质 0.40000 XP_057810589.1
3 Mitochondrion matrix 线粒体基质 0.40000 XP_057810591.1
4 Cytoplasm 细胞质 0.40000 XP_057810593.1
5 Nucleus 细胞核 0.00000 XP_057810589.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:53347643 C T EMS_canonical_SNV CDS_variant 2 B80,B91
Chr5:53347724 CT C 1bp_deletion frameshift_variant 6 B100,B14,B26,B28,B44,C13
Chr5:53347790 C T EMS_canonical_SNV stop_gained 32 A1,A16,A19,B10,B104,B108,B11,B137,B138,B140,B17,B2,B29,B36,B47,B50,B63,B69,B72,B76,B83,B84,B95,B99,C26,C31,C54,C75,C83,C84,C87,D3
Chr5:53347819 A AG 1bp_insertion frameshift_variant 6 B100,B14,B26,B28,B44,C13
Chr5:53348272 C T EMS_canonical_SNV stop_gained 21 B125,B134,B135,B18,B41,B79,B80,B85,B91,C16,C22,C27,C28,C29,C30,C39,C5,C72,C79,D2,D5
Chr5:53348305 G GC 1bp_insertion frameshift_variant 11 A10,A5,B100,B138,B14,B26,B28,B44,B7,C11,C69
Chr5:53348428 C T EMS_canonical_SNV CDS_variant 2 B80,B91
Chr5:53348456 G A EMS_canonical_SNV CDS_variant 2 B130,C47
Chr5:53348461 T TA 1bp_insertion frameshift_variant 20 A16,A19,B10,B108,B11,B138,B140,B17,B2,B29,B47,B50,B69,B76,B83,B84,B95,C26,C75,D3
Chr5:53348511 C T EMS_canonical_SNV CDS_variant 2 C41,C9
Chr5:53348539 A AAC 2bp_insertion frameshift_variant 2 B80,B91
Chr5:53348539 A AAC 2bp_insertion CDS_variant 2 B80,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810589.1
187 aa
N
1
94
187
KOW
ribosomal_L24
C
PF00467 KOW 30-57 aa PF17136 ribosomal_L24 60-117 aa
XP_057810590.1
187 aa
N
1
94
187
KOW
ribosomal_L24
C
PF00467 KOW 30-57 aa PF17136 ribosomal_L24 60-117 aa
XP_057810591.1
178 aa
N
1
89
178
KOW
ribosomal_L24
C
PF00467 KOW 17-48 aa PF17136 ribosomal_L24 51-108 aa
XP_057810592.1
178 aa
N
1
89
178
KOW
ribosomal_L24
C
PF00467 KOW 17-48 aa PF17136 ribosomal_L24 51-108 aa
XP_057810593.1
157 aa
N
1
78
157
KOW
ribosomal_L24
C
PF00467 KOW 1-27 aa PF17136 ribosomal_L24 30-87 aa
XP_057810594.1
157 aa
N
1
78
157
KOW
ribosomal_L24
C
PF00467 KOW 1-27 aa PF17136 ribosomal_L24 30-87 aa
XP_057810595.1
152 aa
N
1
76
152
KOW
ribosomal_L24
C
PF00467 KOW 30-57 aa PF17136 ribosomal_L24 60-117 aa
XP_057810596.1
144 aa
N
1
72
144
KOW
ribosomal_L24
C
PF00467 KOW 30-57 aa PF17136 ribosomal_L24 60-117 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810589.1 Pfam PF00467 KOW Family 30 57 3.4e-06 27.4 KOW motif
XP_057810589.1 Pfam PF17136 ribosomal_L24 Domain 60 117 1.1e-21 77.6 Large ribosomal subunit protein uL24, C-terminal domain
XP_057810590.1 Pfam PF00467 KOW Family 30 57 3.4e-06 27.4 KOW motif
XP_057810590.1 Pfam PF17136 ribosomal_L24 Domain 60 117 1.1e-21 77.6 Large ribosomal subunit protein uL24, C-terminal domain
XP_057810591.1 Pfam PF00467 KOW Family 17 48 9.9e-08 32.2 KOW motif
XP_057810591.1 Pfam PF17136 ribosomal_L24 Domain 51 108 7.3e-22 78.2 Large ribosomal subunit protein uL24, C-terminal domain
XP_057810592.1 Pfam PF00467 KOW Family 17 48 9.9e-08 32.2 KOW motif
XP_057810592.1 Pfam PF17136 ribosomal_L24 Domain 51 108 7.3e-22 78.2 Large ribosomal subunit protein uL24, C-terminal domain
XP_057810593.1 Pfam PF00467 KOW Family 1 27 5.1e-06 26.8 KOW motif
XP_057810593.1 Pfam PF17136 ribosomal_L24 Domain 30 87 9.6e-22 77.8 Large ribosomal subunit protein uL24, C-terminal domain
XP_057810594.1 Pfam PF00467 KOW Family 1 27 5.1e-06 26.8 KOW motif
XP_057810594.1 Pfam PF17136 ribosomal_L24 Domain 30 87 9.6e-22 77.8 Large ribosomal subunit protein uL24, C-terminal domain
XP_057810595.1 Pfam PF00467 KOW Family 30 57 2.4e-06 27.8 KOW motif
XP_057810595.1 Pfam PF17136 ribosomal_L24 Domain 60 117 6.1e-22 78.4 Large ribosomal subunit protein uL24, C-terminal domain
XP_057810596.1 Pfam PF00467 KOW Family 30 57 2.2e-06 27.9 KOW motif
XP_057810596.1 Pfam PF17136 ribosomal_L24 Domain 60 117 5.1e-22 78.7 Large ribosomal subunit protein uL24, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XR_009102069.1
TACCTATTCATTTCCCTCAATTCGCCGGATCTCTCTCTCTCTCTCCATTTCTTCACTCTGCTTCTTGGCCTCTCCCTCCCGCCGCCGCTGGTCTCTAAGGATAAAATGGGTTGGAAGTCAGCGCAGAAACTGATTCATCACTGGAAGATTCTTAGAGGTGATAATGTAAGGGAGCTGAGATCATATGCCTCTTCTTCTGGATCTTTTGACGGGTTTCGCTGTTATTGCCGGGGATTTTCTTCTTCAAATTTCCGTTCATT...
XM_057954612.1
TACCTATTCATTTCCCTCAATTCGCCGGATCTCTCTCTCTCTCTCCATTTCTTCACTCTGCTTCTTGGCCTCTCCCTCCCGCCGCCGCTGGTCTCTAAGGATAAAATGGGTTGGAAGTCAGCGCAGAAACTGATTCATCACTGGAAGATTCTTAGAGGTGATAATGTAAGGGAGCTGAGATCATATGCCTCTTCTTCTGGATCTTTTGACGGGTTTCGCTGTTATTGCCGGGGATTTTCTTCTTCAAATTTCCGTTCATT...

CDS

8 records

下载 CDS FASTA
LOC131025028
ATGGGTTGGAAGTCAGCGCAGAAACTGATTCATCACTGGAAGATTCTTAGAGGTGATAATATCATGATAATTAGGGGGAAAGATAAAGGGGAGACTGGTGTTGTTAAGCGTGTAGTTCGATCTCAGAATCGTGTTATTGTTGAGGGCAAGAATCTGGTGAAGAAACATATCAAGCAAGGTCAAGGTCACGAAGGTGGGATTTTCTCAGTAGAAGCCCCCCTTCATGTCTCAAATGTTCAGGTTGTCGATCCAGTCACAGC...
LOC131025028
ATGGGTTGGAAGTCAGCGCAGAAACTGATTCATCACTGGAAGATTCTTAGAGGTGATAATATCATGATAATTAGGGGGAAAGATAAAGGGGAGACTGGTGTTGTTAAGCGTGTAGTTCGATCTCAGAATCGTGTTATTGTTGAGGGCAAGAATCTGGTGAAGAAACATATCAAGCAAGGTCAAGGTCACGAAGGTGGGATTTTCTCAGTAGAAGCCCCCCTTCATGTCTCAAATGTTCAGGTTGTCGATCCAGTCACAGC...

Protein

8 records

下载 Protein FASTA
XP_057810589.1
MPLLLDLLTGFAVIAGDFLLQISVHYDWQIMIIRGKDKGETGVVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFSVEAPLHVSNVQVVDPVTAKPCKVGIKYLEDGSKVRVARGIGTSGAIIPRPEILKMRTTPRPTIGNFQILAFSPAYLCECFSSCSIHLELDPAFVSSRLNMLFFFVQDKT
XP_057810590.1
MPLLLDLLTGFAVIAGDFLLQISVHYDWQIMIIRGKDKGETGVVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFSVEAPLHVSNVQVVDPVTAKPCKVGIKYLEDGSKVRVARGIGTSGAIIPRPEILKMRTTPRPTIGNFQILAFSPAYLCECFSSCSIHLELDPAFVSSRLNMLFFFVQDKT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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