Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003967`

染色体: Chr05 坐标: 53411086-53418301 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003967`
名称	SmilChr05G003967
描述	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	53411086 - 53418301 / `-`

ID 对照

NCBI Gene ID	`LOC131025036`
GeneID	`131025036`
locus_tag	`-`
NCBI Name	`LOC131025036`
原始查询	`SmilChr05G003967`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like
产物	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like
Arabidopsis	`AT3G25800` (PP2AA2) protein phosphatase 2A subunit A2 [Source:NCBI gene (formerly Entrezgene);Acc:822171] identity=92.7; qcov=1; evalue=0; confidence=high
Rice	`Os09g0249700` (PP2A-A) - identity=88.2; qcov=1; evalue=0; confidence=high
GO	GO:0000159 (protein phosphatase type 2A complex); GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0006470 (protein dephosphorylation); GO:0019888 (protein phosphatase regulator activity)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil04382 (Cornified envelope formation - Salvia miltiorrhiza (redroot sage))
Pfam	PF02985 (HEAT); PF22646 (PPP2R1A-like_HEAT); PF22956 (PIK3R4-like_middle)
InterPro	-
eggNOG	-
NR	GeneID:131025036

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057810606.1`
2	Cytosol	细胞质基质	1.00000	`XP_057810606.1`
3	Nucleus	细胞核	0.60000	`XP_057810606.1`
4	Chromosome	染色体	0.00000	`XP_057810606.1`
5	Centromere	着丝粒	0.00000	`XP_057810606.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:53412287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A3,B24,C35,C85
`Chr5:53412570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr5:53412816`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr5:53413382`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr5:53414880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B99,C64,C66
`Chr5:53417175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B109,B95,C54
`Chr5:53417210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B124,B20,C58,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810606.1

586 aa

293

586

HEAT

PIK3R4-like_middle

HEAT

PPP2R1A-like_HEAT

PIK3R4-like_middle

HEAT

PF02985 HEAT 168-192 aa PF22956 PIK3R4-like_middle 195-309 aa PF02985 HEAT 242-271 aa PF22646 PPP2R1A-like_HEAT 276-351 aa PF22956 PIK3R4-like_middle 358-518 aa PF02985 HEAT 440-465 aa

XP_057810607.1

586 aa

293

586

HEAT

PIK3R4-like_middle

HEAT

PPP2R1A-like_HEAT

PIK3R4-like_middle

HEAT

PF02985 HEAT 168-192 aa PF22956 PIK3R4-like_middle 195-309 aa PF02985 HEAT 242-271 aa PF22646 PPP2R1A-like_HEAT 276-351 aa PF22956 PIK3R4-like_middle 358-518 aa PF02985 HEAT 440-465 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810606.1`	Pfam	`PF02985`	HEAT	Repeat	168	192	2.9e-53	173.5	HEAT repeat
`XP_057810606.1`	Pfam	`PF22956`	PIK3R4-like_middle	Repeat	195	309	2.5e-27	96.3	PIK3R4-like, middle domain
`XP_057810606.1`	Pfam	`PF02985`	HEAT	Repeat	242	271	2.9e-53	173.5	HEAT repeat
`XP_057810606.1`	Pfam	`PF22646`	PPP2R1A-like_HEAT	Repeat	276	351	1.3e-45	154.5	PPP2R1A-like HEAT repeat
`XP_057810606.1`	Pfam	`PF22956`	PIK3R4-like_middle	Repeat	358	518	2.5e-27	96.3	PIK3R4-like, middle domain
`XP_057810606.1`	Pfam	`PF02985`	HEAT	Repeat	440	465	2.9e-53	173.5	HEAT repeat
`XP_057810607.1`	Pfam	`PF02985`	HEAT	Repeat	168	192	2.9e-53	173.5	HEAT repeat
`XP_057810607.1`	Pfam	`PF22956`	PIK3R4-like_middle	Repeat	195	309	2.5e-27	96.3	PIK3R4-like, middle domain
`XP_057810607.1`	Pfam	`PF02985`	HEAT	Repeat	242	271	2.9e-53	173.5	HEAT repeat
`XP_057810607.1`	Pfam	`PF22646`	PPP2R1A-like_HEAT	Repeat	276	351	1.3e-45	154.5	PPP2R1A-like HEAT repeat
`XP_057810607.1`	Pfam	`PF22956`	PIK3R4-like_middle	Repeat	358	518	2.5e-27	96.3	PIK3R4-like, middle domain
`XP_057810607.1`	Pfam	`PF02985`	HEAT	Repeat	440	465	2.9e-53	173.5	HEAT repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954624.1
ACCCGTTTTTGAGCTCCTGCAAACGCGTTTACCAAAAAAAAGAGCGAAAAATAGAAAGATAGAGCCCCGCGATTCCTACACCGGCTCCGAAAACGCATCTTAAAGTATCTCTCTCTCTCAACCTTCGAATCTGAGAGAAGCCGGCGGGAACTCATTTATCCGGAAGATTAATATTGTGGTTGGATGGCGATGGTGGACGAGCCTCTATATCCAATAGCAGTGCTCATAGATGAGCTCAAGAATGATGACATTCAACTTCG...

XM_057954623.1
CGTTTTTGAGCTCCTGCAAACGCGTTTACCAAAAAAAAGAGCGAAAAATAGAAAGATAGAGCCCCGCGATTCCTACACCGGCTCCGAAAACGCATCTTAAAGTATCTCTCTCTCTCAACCTTCGAATCTGAGAGAAGCCGGCGGGAACTCATTTATCCGGTAACGGAAGATTAATATTGTGGTTGGATGGCGATGGTGGACGAGCCTCTATATCCAATAGCAGTGCTCATAGATGAGCTCAAGAATGATGACATTCAACT...

CDS

2 records

下载 CDS FASTA

LOC131025036
ATGGCGATGGTGGACGAGCCTCTATATCCAATAGCAGTGCTCATAGATGAGCTCAAGAATGATGACATTCAACTTCGGCTAAACTCTATACGAAGACTATCCACCATTGCACGTGCACTGGGGGAGGAAAGAACTCGAAAAGAGTTGATACCATTTCTGAGCGAGAACAATGACGATGATGATGAGGTGCTCCTTGCTATGGCTGAAGAATTGGGTGTATTCATTCCATATGTTGGAGGGGTGGAGCATGCTCATGTTTT...

Protein

2 records

下载 Protein FASTA

XP_057810606.1
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLIDSFIPLVKRLAAGEWFTARVSACGLFHIAYPSASDVLKTELRSIYSQLCQDDMPMVRRAAAANLGKFAATVEASPLKSDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLDPQDCVGHILPVIVSFSQDKSWRVRYM...

XP_057810607.1
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLIDSFIPLVKRLAAGEWFTARVSACGLFHIAYPSASDVLKTELRSIYSQLCQDDMPMVRRAAAANLGKFAATVEASPLKSDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLDPQDCVGHILPVIVSFSQDKSWRVRYM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器