Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003971`

染色体: Chr05 坐标: 53503955-53511500 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003971`
名称	SmilChr05G003971
描述	suppressor of mec-8 and unc-52 protein homolog 1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	53503955 - 53511500 / `-`

ID 对照

NCBI Gene ID	`LOC131025039`
GeneID	`131025039`
locus_tag	`-`
NCBI Name	`LOC131025039`
原始查询	`SmilChr05G003971`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	suppressor of mec-8 and unc-52 protein homolog 1
产物	suppressor of mec-8 and unc-52 protein homolog 1
Arabidopsis	`AT1G73720` (SMU1) transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:843707] identity=86.7; qcov=0.992; evalue=0; confidence=high
Rice	`Os01g0322800` (OsWD40-13) - identity=89.1; qcov=0.998; evalue=0; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0005515 (protein binding); GO:0071011 (precatalytic spliceosome)
KEGG	-
Pfam	PF00400 (WD40); PF12894 (ANAPC4_WD40); PF17814 (LisH_TPL); PF23098 (Beta-prop_NOL10_N); PF23381 (Beta-prop_IFT122_1st)
InterPro	-
eggNOG	-
NR	GeneID:131025039

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057810612.1`
2	Nucleus	细胞核	0.80000	`XP_057810612.1`
3	Cytosol	细胞质基质	0.80000	`XP_057810612.1`
4	Nucleoplasm	核质	0.60000	`XP_057810612.1`
5	Midbody	Midbody	0.60000	`XP_057810612.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:53504189`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	B87,C46,C50
`Chr5:53504189`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B87,C46,C50
`Chr5:53504219`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr5:53504222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,B35,B6
`Chr5:53506947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B121,B86,D11
`Chr5:53507026`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:53507335`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	A2,B121,B30,B86
`Chr5:53507335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B121,B30,B86
`Chr5:53507392`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr5:53507429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B107,B8,C16,C19
`Chr5:53507439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr5:53507702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810612.1

514 aa

257

514

LisH_TPL

WD40

Beta-prop_NOL10_N

Beta-prop_IFT122_1st

WD40

ANAPC4_WD40

WD40

PF17814 LisH_TPL 8-38 aa PF00400 WD40 219-243 aa PF23098 Beta-prop_NOL10_N 219-373 aa PF23381 Beta-prop_IFT122_1st 222-513 aa PF00400 WD40 260-292 aa PF12894 ANAPC4_WD40 272-351 aa PF00400 WD40 297-334 aa PF00400 WD40 340-378 aa PF00400 WD40 476-512 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810612.1`	Pfam	`PF17814`	LisH_TPL	Domain	8	38	3.4e-16	59.3	LisH-like dimerisation domain
`XP_057810612.1`	Pfam	`PF00400`	WD40	Repeat	219	243	8.9e-44	146.8	WD domain, G-beta repeat
`XP_057810612.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	219	373	5.9e-11	42.8	Nucleolar protein 10-like, N-terminal domain
`XP_057810612.1`	Pfam	`PF23381`	Beta-prop_IFT122_1st	Repeat	222	513	3.7e-41	142.0	IFT122 first beta-propeller
`XP_057810612.1`	Pfam	`PF00400`	WD40	Repeat	260	292	8.9e-44	146.8	WD domain, G-beta repeat
`XP_057810612.1`	Pfam	`PF12894`	ANAPC4_WD40	Repeat	272	351	1.2e-16	61.4	Anaphase-promoting complex subunit 4 WD40 domain
`XP_057810612.1`	Pfam	`PF00400`	WD40	Repeat	297	334	8.9e-44	146.8	WD domain, G-beta repeat
`XP_057810612.1`	Pfam	`PF00400`	WD40	Repeat	340	378	8.9e-44	146.8	WD domain, G-beta repeat
`XP_057810612.1`	Pfam	`PF00400`	WD40	Repeat	476	512	8.9e-44	146.8	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954629.1
GCTGGTTTTAAAATAAAGTACACGTGTAATGATCCTAAGGCAAAGGCGCATCACGCAGGGTGTAGTATAGTCACTCTCTCTCACACACACCACGAACAATTTTGGGGTAAAATCCTCTGGAATTTTGAGTACTAGGGTTTAAGCAATTGCCACATTCTCCAACACTACGCCATGTCTTCGACGCTGGAAATCGAAGCTCGAGATGTTATCAAGATTGTACTCCAATTCTGCAAAGAGAATTCCCTGCATCAGACTTTTCA...

CDS

1 records

下载 CDS FASTA

LOC131025039
ATGTCTTCGACGCTGGAAATCGAAGCTCGAGATGTTATCAAGATTGTACTCCAATTCTGCAAAGAGAATTCCCTGCATCAGACTTTTCAAACACTGCAGAATGAGTGTCAGGTTTCTCTAAATACAGTGGACAGCAACGAGACATTTGTTGCTGATATTAATAGTGGGAGGTGGGATGCAATCTTGCCACAAGTTGCCCAACTTAAACTTCCAAGGAAAAAATTAGAAGATCTATATGAGCAGATTGTTCTGGAAATGAT...

Protein

1 records

下载 Protein FASTA

XP_057810612.1
MSSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSNETFVADINSGRWDAILPQVAQLKLPRKKLEDLYEQIVLEMIELREIDTARAILRQTQVMGVMKQEQPERYLRLEHLLVRTYFDPNEVYQDSTKEKRRAQIAQAVAAEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLGHAIKFGKNSHPECARFSPDGQFLVSCSVDGFIEVWDHISGKLKKDLQYQADET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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