Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003984`

染色体: Chr05 坐标: 53660934-53665953 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003984`
名称	SmilChr05G003984
描述	alpha-xylosidase 1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	53660934 - 53665953 / `+`

ID 对照

NCBI Gene ID	`LOC131025053`
GeneID	`131025053`
locus_tag	`-`
NCBI Name	`LOC131025053`
原始查询	`SmilChr05G003984`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-xylosidase 1-like
产物	alpha-xylosidase 1-like
Arabidopsis	`AT1G68560` (XYL1) alpha-xylosidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:843185] identity=72.3; qcov=0.974; evalue=0; confidence=high
Rice	`Os01g0130400` - identity=67.9; qcov=1; evalue=0; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF01055 (Glyco_hydro_31_2nd); PF13802 (Gal_mutarotas_2); PF21365 (Glyco_hydro_31_3rd)
InterPro	-
eggNOG	-
NR	GeneID:131025053

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.80000	`XP_057810630.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057810630.1`
3	Nucleus	细胞核	0.00000	`XP_057810630.1`
4	Chromosome	染色体	0.00000	`XP_057810630.1`
5	Centromere	着丝粒	0.00000	`XP_057810630.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:53661243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:53661337`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr5:53661381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B57,C35,D2
`Chr5:53661517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr5:53661539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,B136,B66,C33
`Chr5:53661544`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B35,B69,C26,C43
`Chr5:53661616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr5:53661679`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:53662168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B104,B21,B26,C83
`Chr5:53663935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr5:53663989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A1,B26,C83,D10
`Chr5:53664023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,B33

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810630.1

921 aa

460

921

Gal_mutarotas_2

Glyco_hydro_31_2nd

Glyco_hydro_31_3rd

PF13802 Gal_mutarotas_2 67-242 aa PF01055 Glyco_hydro_31_2nd 286-659 aa PF21365 Glyco_hydro_31_3rd 667-756 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810630.1`	Pfam	`PF13802`	Gal_mutarotas_2	Domain	67	242	1.5e-10	42.4	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain
`XP_057810630.1`	Pfam	`PF01055`	Glyco_hydro_31_2nd	Domain	286	659	5.7e-120	401.2	Glycosyl hydrolases family 31 TIM-barrel domain
`XP_057810630.1`	Pfam	`PF21365`	Glyco_hydro_31_3rd	Domain	667	756	3.6e-21	76.1	Glycosyl hydrolase family 31 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954647.1
ATTAAATCATATAAATAAATACTGCAATCAATCATACCATATGATTAAACCAAAAAATCCCCAGCAAAGAAATGCTCTGATAAAACAAAACAAAAAAATTAAAAAAAAAAAATCACAAGTCACATGTAACGCTAAAGGAGTTTCTTCTCAAATCACGCCAACCTCATCCACAGCCATCACATGAGCAATCCATGCCTATGCATTTGTGCCATTCTCACTCTATATAAACCCTCAACACTTCCCTCCATAATCACTTCACA...

CDS

1 records

下载 CDS FASTA

LOC131025053
ATGTCGCTCTCTTCCTCTGCAATTCCACCATTGTTGCTGTCACTCTTCATTTTAGCTTCTGCTGCTGTTCCGGAAAAAATCGGTAATGGCTACCGCTTGATTTCCATCCAGGAGTCCTCCAATGGCGGCCTCGTCGGCCTCCTGCAGCTCAAGCAGAGGAACAACATCTACGGCGCCGATATTCCCCGCCTGCAGCTCTCCGTCAAGCACGAAACCGGTAGCCGTTTGAGAGTCCACATCACCGACGCGGAGAAGCAGAG...

Protein

1 records

下载 Protein FASTA

XP_057810630.1
MSLSSSAIPPLLLSLFILASAAVPEKIGNGYRLISIQESSNGGLVGLLQLKQRNNIYGADIPRLQLSVKHETGSRLRVHITDAEKQRWEVPYNLLPREKPPPLKQALGRYDALSPSEYVGAELIFAYTEDPFTFSVKRRSNGEILFDSRAEASDPYSDLVFKDQYLEISTKLPKNAALYGLGENTQPHGIKLYPNDPYTLYTTDISAINLNADLYGSHPVYMDLRNVGGEASAHAVLLLNSNGMDVFYRGDSLTYKVIGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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