Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003999`

染色体: Chr05 坐标: 53870814-53872839 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003999`
名称	SmilChr05G003999
描述	protein phosphatase 1 regulatory subunit INH3
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	53870814 - 53872839 / `-`

ID 对照

NCBI Gene ID	`LOC131025066`
GeneID	`131025066`
locus_tag	`-`
NCBI Name	`LOC131025066`
原始查询	`SmilChr05G003999`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein phosphatase 1 regulatory subunit INH3
产物	protein phosphatase 1 regulatory subunit INH3
Arabidopsis	`AT2G31305` (INH3) inhibitor-3 [Source:NCBI gene (formerly Entrezgene);Acc:817688] identity=63; qcov=0.532; evalue=6.44e-26; confidence=medium
Rice	`Os05g0270400` - identity=57.6; qcov=0.491; evalue=1.87e-22; confidence=medium
GO	GO:0004865 (protein serine/threonine phosphatase inhibitor activity); GO:0005634 (nucleus); GO:0008157 (protein phosphatase 1 binding); GO:0032515 (GO:0032515)
KEGG	-
Pfam	PF07491 (PPI_Ypi1)
InterPro	-
eggNOG	-
NR	GeneID:131025066

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057810649.1`
2	Nucleus	细胞核	0.40000	`XP_057810649.1`
3	Chromosome	染色体	0.00000	`XP_057810649.1`
4	Centromere	着丝粒	0.00000	`XP_057810649.1`
5	Chromatin	染色质	0.00000	`XP_057810649.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:53872310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B41,B8
`Chr5:53872403`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:53872491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B39
`Chr5:53872516`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B1,B2
`Chr5:53872704`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B65,C71
`Chr5:53872713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B63,B89,C50
`Chr5:53872720`	`A`	`AT`	1bp_insertion	frameshift_variant	52	A11,A2,A21,B101,B109,B110,B12,B120,B121,B122,B125,B126,B131,B23,B3,B30,B31,B32,B35,B5,B51,B52,B53,B57,B6,B63,B81,B82,B89,B96,C12,C14,C19,C20,C21,C25,C3,C35,C38,C4,C40,C41,C43,C52,C63,C7,C73,C78,C82,C86,D5,D7
`Chr5:53872728`	`G`	`GA`	1bp_insertion	frameshift_variant	30	A14,A25,B105,B128,B13,B137,B138,B37,B48,B49,B52,B61,B71,B79,B8,B87,B88,C1,C18,C22,C31,C33,C43,C49,C51,C55,C62,C65,C71,C80
`Chr5:53872731`	`AAG`	`A`	2bp_deletion	frameshift_variant	20	A21,B101,B12,B120,B121,B23,B32,B52,B53,B63,B81,B89,B96,C12,C38,C4,C43,C7,C73,D7
`Chr5:53872732`	`AG`	`A`	1bp_deletion	frameshift_variant	70	A1,A11,A15,A16,A18,A21,A23,A4,A6,B102,B104,B111,B124,B126,B13,B131,B132,B15,B19,B20,B21,B26,B31,B33,B4,B43,B44,B45,B49,B50,B53,B55,B56,B57,B63,B65,B71,B77,B83,B86,B9,B91,B92,B94,B99,C11,C14,C18,C19,C24,C27,C28,C34,C44,C47,C48,C5,C50,C54,C58,C59,C6,C62,C69,C74,C78,C84,D11,D2,D5
`Chr5:53872738`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A10,B110,B136,D4,D9
`Chr5:53872754`	`T`	`TA`	1bp_insertion	frameshift_variant	20	A24,B112,B118,B129,B22,B45,B49,B50,B8,B82,B83,C10,C15,C22,C5,C52,C63,C70,C75,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810649.1

173 aa

173

PPI_Ypi1

PF07491 PPI_Ypi1 95-138 aa

XP_057810650.1

173 aa

173

PPI_Ypi1

PF07491 PPI_Ypi1 95-138 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810649.1`	Pfam	`PF07491`	PPI_Ypi1	Family	95	138	4.1e-18	65.6	Protein phosphatase inhibitor
`XP_057810650.1`	Pfam	`PF07491`	PPI_Ypi1	Family	95	138	4.1e-18	65.6	Protein phosphatase inhibitor

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009102081.1
AAATGAAATTGGGACCCTAATCAAATGAACCAACACCTTCAACAAATCCACCGCGCTAACTGTCCCACCAAAATGCACAAACTTACGCCTATAAACGACGCAAACCTTTTCCCCCAAATTCAAATCAATCAAAACCTAGCCATAATCGCAACAATGGCGAGACCGACCTCCAGCAGGCAATTGACCACCGCCCCTTCCACGGCGCCGGCTACGGGAACTACCACCACCACCACCGTGGCCCTCGAGACGTCGTCCTCCAA...

XR_009102080.1
AAATGAAATTGGGACCCTAATCAAATGAACCAACACCTTCAACAAATCCACCGCGCTAACTGTCCCACCAAAATGCACAAACTTACGCCTATAAACGACGCAAACCTTTTCCCCCAAATTCAAATCAATCAAAACCTAGCCATAATCGCAACAATGGCGAGACCGACCTCCAGCAGGCAATTGACCACCGCCCCTTCCACGGCGCCGGCTACGGGAACTACCACCACCACCACCGTGGCCCTCGAGACGTCGTCCTCCAA...

CDS

2 records

下载 CDS FASTA

LOC131025066
ATGAACCAACACCTTCAACAAATCCACCGCGCTAACTGTCCCACCAAAATGCACAAACTTACGCCTATAAACGACGCAAACCTTTTCCCCCAAATTCAAATCAATCAAAACCTAGCCATAATCGCAACAATGGCGAGACCGACCTCCAGCAGGCAATTGACCACCGCCCCTTCCACGGCGCCGGCTACGGGAACTACCACCACCACCACCGTGGCCCTCGAGACGTCGTCCTCCAACCAGCAGTCGCAGATTAGGGATTC...

Protein

2 records

下载 Protein FASTA

XP_057810649.1
MNQHLQQIHRANCPTKMHKLTPINDANLFPQIQINQNLAIIATMARPTSSRQLTTAPSTAPATGTTTTTTVALETSSSNQQSQIRDSLVLKLKLPKKKVSWKEGTVDNEFMNKKSSKKCCIFHKEKPFDEDDSDAEGDCDHDHDHDHDHDHDHHDTGRDIDVKGSHEDGSSSR

XP_057810650.1
MNQHLQQIHRANCPTKMHKLTPINDANLFPQIQINQNLAIIATMARPTSSRQLTTAPSTAPATGTTTTTTVALETSSSNQQSQIRDSLVLKLKLPKKKVSWKEGTVDNEFMNKKSSKKCCIFHKEKPFDEDDSDAEGDCDHDHDHDHDHDHDHHDTGRDIDVKGSHEDGSSSR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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