当前解析结果
SmilChr05G004020| 统一新 Gene ID | SmilChr05G004020 |
|---|---|
| 名称 | SmilChr05G004020 |
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54185814 - 54189554 / - |
| NCBI Gene ID | LOC131025085 |
|---|---|
| GeneID | 131025085 |
| locus_tag | - |
| NCBI Name | LOC131025085 |
| 原始查询 | SmilChr05G004020 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 产物 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| Arabidopsis | AT1G18390 (AT1G18390)Serine/Threonine kinase family catalytic domain protein [Source:NCBI gene (formerly Entrezgene);Acc:838420] identity=42.4; qcov=1.04; evalue=1.51e-170; confidence=medium |
| Rice | Os01g0136400 (OsWAK1)- identity=41.6; qcov=0.986; evalue=3.32e-139; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind); PF14380 (WAK_assoc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025085 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057810669.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057810669.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057810669.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057810669.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057810669.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54185953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,C66 |
Chr5:54186012 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C33 |
Chr5:54186012 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C33 |
Chr5:54186014 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr5:54186242 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:54186297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr5:54186430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr5:54186433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B35 |
Chr5:54186526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C85,D4 |
Chr5:54186618 |
C |
CCA |
2bp_insertion | frameshift_variant | 1 | B9 |
Chr5:54186618 |
C |
CCA |
2bp_insertion | CDS_variant | 1 | B9 |
Chr5:54186625 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B40,B91,C16,C31,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810669.1PF13947
GUB_WAK_bind 33-97 aa
PF14380
WAK_assoc 171-237 aa
PF00069
Pkinase 319-580 aa
PF07714
PK_Tyr_Ser-Thr 319-583 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810669.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 33 | 97 | 1.1e-16 | 61.7 | Wall-associated receptor kinase galacturonan-binding |
XP_057810669.1 |
Pfam | PF14380 |
WAK_assoc | Domain | 171 | 237 | 1.6e-15 | 58.3 | Wall-associated receptor kinase C-terminal |
XP_057810669.1 |
Pfam | PF00069 |
Pkinase | Domain | 319 | 580 | 2.8e-46 | 158.8 | Protein kinase domain |
XP_057810669.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 319 | 583 | 2.4e-47 | 162.1 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。