Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G004034

染色体: Chr05 坐标: 54311911-54316592 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G004034
名称SmilChr05G004034
描述uncharacterized SmilChr05G004034
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向54311911 - 54316592 / -

ID 对照

NCBI Gene IDLOC131025095
GeneID131025095
locus_tag-
NCBI NameLOC131025095
原始查询SmilChr05G004034

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述alpha/beta hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838071]; symbol=AT1G15060; hit=AT1G15060; species=arabidopsis; confidence=high
产物alpha/beta hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838071]; symbol=AT1G15060; hit=AT1G15060; species=arabidopsis; confidence=high
ArabidopsisAT1G15060 (AT1G15060)
alpha/beta hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838071]
identity=67.8; qcov=0.919; evalue=0; confidence=high
RiceOs01g0692600
-
identity=59.3; qcov=0.89; evalue=0; confidence=high
GOGO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis)
KEGG-
PfamPF00561 (Abhydrolase_1)
InterPro-
eggNOG-
NRGeneID:131025095

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057810686.1
2 Chloroplast membrane 叶绿体膜 0.80000 XP_057810686.1
3 Chloroplast stroma 叶绿体基质 0.40000 XP_057810686.1
4 Chloroplast thylakoid 类囊体 0.20000 XP_057810686.1
5 Chloroplast thylakoid membrane 类囊体膜 0.20000 XP_057810686.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:54312340 G A EMS_canonical_SNV CDS_variant 3 B29,B97,D8
Chr5:54312388 G A EMS_canonical_SNV CDS_variant 2 B121,D5
Chr5:54312536 C T EMS_canonical_SNV CDS_variant 5 B113,C27,C30,C41,C55
Chr5:54312570 C T EMS_canonical_SNV CDS_variant 1 D10
Chr5:54312696 C T EMS_canonical_SNV CDS_variant 1 C24
Chr5:54312704 G A EMS_canonical_SNV CDS_variant 1 D4
Chr5:54313465 C T EMS_canonical_SNV CDS_variant 1 D1
Chr5:54313506 C T EMS_canonical_SNV CDS_variant 2 C23,C35
Chr5:54313996 C T EMS_canonical_SNV CDS_variant 1 B64
Chr5:54314006 C T EMS_canonical_SNV CDS_variant 1 B124
Chr5:54314400 G A EMS_canonical_SNV CDS_variant 2 C2,C75
Chr5:54314539 G A EMS_canonical_SNV CDS_variant 3 B41,B93,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057810686.1
591 aa
N
1
296
591
Abhydrolase_1
C
PF00561 Abhydrolase_1 345-565 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810686.1 Pfam PF00561 Abhydrolase_1 Domain 345 565 2.1e-10 41.4 alpha/beta hydrolase fold

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057954703.1
GGACACAACGATGACGTGTCGCCTTTATCCAATTCACTTTCTAAAAATAACAAAGGAAAGTAAATATAAAAAGAAAATCCCATTCTCACCCCTTTCAAGGAAGCTCCTACACAGTGGAAGAACTTCGATTTGGTGAAGCCACGCATCTCAGGTCAAACTCGAGCAAATTCAATCGATATTTCGCCAAAAATTCAAAACTAACAAAATACAATTCGCAAATTCTACTGGAGAAGTAATCAATCATGGCGATCGCCCAATCT...

CDS

1 records

下载 CDS FASTA
LOC131025095
ATGGCGATCGCCCAATCTAACATGAATCCGGCGATCCACCTAGCCGCCGCCACATTCCGCCACCACCACCGCCGCTGCCTCCTCCAATTTCGCGACTGCTTCACCTCTCCGCGCATCTCTTCCGTCCGCCGCCTCTCGCTCGTGTCTGCGAGAGTCAGAGCGTTCTCCACCAACGAGACTCAGCCGGCGGATGTTGAGAAGATCCCGAACAAACCGCCGATATGCACCGCCGACGAGCTCCATTACGTCACGGTCAACAA...

Protein

1 records

下载 Protein FASTA
XP_057810686.1
MAIAQSNMNPAIHLAAATFRHHHRRCLLQFRDCFTSPRISSVRRLSLVSARVRAFSTNETQPADVEKIPNKPPICTADELHYVTVNNSGWRLALWRYSPSPQAPPRNHPLLLLSGVGTNAIGYDLSPGSSFARYMCGQGFDTWVLEVRGAGLSTQELDGKDVEKSAHAISEQMEAAAENMSIGALPANQQSTSVQSSSKKAEITVVEEELNGLATAWDESRLVTELTQTFTRLSERLSGFLSESQSKIMSAKFFDQVSEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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