Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004040`

染色体: Chr05 坐标: 54376956-54384086 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004040`
名称	SmilChr05G004040
描述	amino-acid permease BAT1 homolog
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	54376956 - 54384086 / `+`

ID 对照

NCBI Gene ID	`LOC131025103`
GeneID	`131025103`
locus_tag	`-`
NCBI Name	`LOC131025103`
原始查询	`SmilChr05G004040`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	amino-acid permease BAT1 homolog
产物	amino-acid permease BAT1 homolog
Arabidopsis	`AT2G01170` (BAT1) bidirectional amino acid transporter 1 [Source:NCBI gene (formerly Entrezgene);Acc:814645] identity=75.7; qcov=0.962; evalue=0; confidence=high
Rice	`Os01g0607200` (OsBAT1) - identity=78.4; qcov=0.96; evalue=0; confidence=high
GO	GO:0005313 (L-glutamate transmembrane transporter activity); GO:0015180 (L-alanine transmembrane transporter activity); GO:0015185 (gamma-aminobutyric acid transmembrane transporter activity); GO:0015189 (L-lysine transmembrane transporter activity); GO:0015812 (gamma-aminobutyric acid transport); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00324 (AA_permease); PF13520 (AA_permease_2)
InterPro	-
eggNOG	-
NR	GeneID:131025103

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057810691.1`
2	Vacuole	液泡	0.20000	`XP_057810691.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057810692.1`
4	Nucleus	细胞核	0.00000	`XP_057810692.1`
5	Chromosome	染色体	0.00000	`XP_057810692.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:54377149`	`GGC`	`G`	2bp_deletion	frameshift_variant	149	A1,A10,A13,A14,A18,A19,A21,A22,A23,A24,A25,A5,A6,A9,B1,B101,B102,B103,B105,B107,B109,B110,B111,B113,B114,B115,B118,B119,B121,B124,B125,B126,B127,B13,B130,B131,B132,B134,B136,B137,B14,B140,B16,B17,B18,B2,B20,B22,B23,B26,B28,B29,B30,B32,B33,B35,B36,B37,B4,B40,B42,B43,B47,B49,B5,B50,B51,B53,B54,B56,B57,B58,B60,B61,B62,B64,B65,B66,B69,B7,B72,B77,B79,B82,B83,B88,B93,B94,B96,B97,B98,B99,C1,C11,C12,C14,C15,C17,C18,C19,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C35,C40,C43,C45,C46,C49,C5,C50,C51,C52,C55,C56,C57,C60,C63,C65,C68,C69,C7,C70,C71,C72,C73,C75,C77,C78,C79,C8,C82,C84,C85,C86,C87,C9,D1,D2,D4,D5
`Chr5:54377169`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,D11
`Chr5:54377343`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B67,B82,C29
`Chr5:54377351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A22,C48
`Chr5:54377353`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C15
`Chr5:54377364`	`C`	`T`	EMS_canonical_SNV	stop_gained	32	A11,A16,A22,A23,B105,B109,B111,B113,B128,B130,B22,B32,B39,B41,B42,B43,B48,B55,B76,B91,B97,B98,C15,C22,C23,C28,C3,C32,C42,C54,C58,D1
`Chr5:54377500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr5:54377546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr5:54381233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr5:54381273`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B18,B69,B87,B9,C71
`Chr5:54381523`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B67,B82,C29
`Chr5:54381546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810691.1

528 aa

264

528

AA_permease_2

AA_permease

PF13520 AA_permease_2 44-500 aa PF00324 AA_permease 65-494 aa

XP_057810692.1

521 aa

260

521

AA_permease_2

AA_permease

PF13520 AA_permease_2 41-493 aa PF00324 AA_permease 54-487 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810691.1`	Pfam	`PF13520`	AA_permease_2	Family	44	500	8.3e-63	213.5	Amino acid permease
`XP_057810691.1`	Pfam	`PF00324`	AA_permease	Domain	65	494	1.3e-28	100.7	Amino acid permease
`XP_057810692.1`	Pfam	`PF13520`	AA_permease_2	Family	41	493	1.9e-63	215.6	Amino acid permease
`XP_057810692.1`	Pfam	`PF00324`	AA_permease	Domain	54	487	1.5e-26	93.8	Amino acid permease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954709.1
ACTTCACATCTATACAAAATTATTTTTTTAAAATATCTTGAATTAGGCTCCAATAAGTCAATAACTAGTCATCAGAAAATACAAACGGACAAAATACAAACTGAATCTGCATCTTCACAATCTGCTATTTTCGACTATGGAAGCTCCGACGGCGGCGACCCACGCCGCTCCCTACCATCGGTTGCCGGACTCCGGCGTCTCCCGCCTCAATCAGCTGGGTTACAAGCAGGAGCTCCGCCGCTCCCTCTCCGCAATCTCCA...

XM_057954708.1
CATACCTTCCTTGCTTCAGTTTGCACCAAACAAATCAAGATTCAAGAAATTCCAATACATAGAGTCTCGTAAAATTCAAATTCTTTATTTCTTTCTGAAACGACAAAGTCAGATTCTCATTCACTGTGATTTGCCAGATTGTAACTGCGCAAGATAGCTCTTTCTTCTCCCCTTTTCTCTCTCTCTCTCTCCCAAAAAAAAAAATGGTGTGGGAGAGAGGAAAGAATCAGCCGCCGCTTCCATCACATGTCCAAGAAAGG...

CDS

2 records

下载 CDS FASTA

LOC131025103
ATGGAAGCTCCGACGGCGGCGACCCACGCCGCTCCCTACCATCGGTTGCCGGACTCCGGCGTCTCCCGCCTCAATCAGCTGGGTTACAAGCAGGAGCTCCGCCGCTCCCTCTCCGCAATCTCCAACTTCTCGGTGACATTCTCGATAATCTCGGTCATCACGGGCATAACCACGCTGTACAGTCAAGGGCTGAGCTACGGCGGACCGGTGGCGATGGTTTACGGGTGGCCGATTGTGGGCGCGATGACGTTCACGGTGGG...

LOC131025103
ATGGTGTGGGAGAGAGGAAAGAATCAGCCGCCGCTTCCATCACATGTCCAAGAAAGGGCCGGTGATTCTGCTGATTCGGGCCATGCACGCCTACATGAGCTCGGCTACAAACAAGAACTCAAGCGCGACCTCTCAGTGTTGTCGAACTTCGCCTTCTCGTTTTCGATCATATCGGTGCTCACCGGAGTGACTACCCTGTACAACACCGGGCTGACCTACGGTGGGCCCGTTTCCTTGGTCTACGGATGGCTGATCGCCGG...

Protein

2 records

下载 Protein FASTA

XP_057810691.1
MVWERGKNQPPLPSHVQERAGDSADSGHARLHELGYKQELKRDLSVLSNFAFSFSIISVLTGVTTLYNTGLTYGGPVSLVYGWLIAGFFTLIVGYSMAEICSSYPTSGGLYYWSAKLAGPSWAPFASWITGWFNIVGQWAVTTSIDFSLAQLIQVMILLGTGGKNGGGYEASKYVVIAIHGGILLLHAALNSLTISWLSFFGQIAAAWNVLGVFVLMILIPLVATETATAKFVFTDFNTDNGKGINNKLYIFVLGLLMSQ...

XP_057810692.1
MEAPTAATHAAPYHRLPDSGVSRLNQLGYKQELRRSLSAISNFSVTFSIISVITGITTLYSQGLSYGGPVAMVYGWPIVGAMTFTVGLSMAEITSAYPTSGGLYYWAAKLCTDDWAPFASWLTGWFNIVGQWAVTTSIDFSLAQLIQVMILLGTGGKNGGGYEASKYVVIAIHGGILLLHAALNSLTISWLSFFGQIAAAWNVLGVFVLMILIPLVATETATAKFVFTDFNTDNGKGINNKLYIFVLGLLMSQYTLTGYD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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