当前解析结果
SmilChr05G004043| 统一新 Gene ID | SmilChr05G004043 |
|---|---|
| 名称 | SmilChr05G004043 |
| 描述 | putative zinc finger protein At1g68190 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54403183 - 54406583 / + |
| NCBI Gene ID | LOC131025105 |
|---|---|
| GeneID | 131025105 |
| locus_tag | - |
| NCBI Name | LOC131025105 |
| 原始查询 | SmilChr05G004043 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative zinc finger protein At1g68190 |
| 产物 | putative zinc finger protein At1g68190 |
| Arabidopsis | AT1G68190 (BBX27)B-box zinc finger family protein [Source:NCBI gene (formerly Entrezgene);Acc:843148] identity=40.3; qcov=0.811; evalue=8.7e-66; confidence=medium |
| Rice | Os06g0298200 (OsBBX19)- identity=29.9; qcov=0.724; evalue=1.5e-30; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025105 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810695.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057810695.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057810695.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057810695.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057810695.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54403910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:54404039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B69,B86,B9 |
Chr5:54404138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B18,C50 |
Chr5:54404348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,B93 |
Chr5:54404364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B98,C13,C34,C48 |
Chr5:54404373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:54404439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr5:54404457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B140,B30,B35,C48 |
Chr5:54404470 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr5:54404517 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B68,B76,D1 |
Chr5:54404616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr5:54404618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。