当前解析结果
SmilChr05G004051| 统一新 Gene ID | SmilChr05G004051 |
|---|---|
| 名称 | SmilChr05G004051 |
| 描述 | origin of replication complex subunit 4 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54486689 - 54494371 / - |
| NCBI Gene ID | LOC131025113 |
|---|---|
| GeneID | 131025113 |
| locus_tag | - |
| NCBI Name | LOC131025113 |
| 原始查询 | SmilChr05G004051 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | origin of replication complex subunit 4 |
| 产物 | origin of replication complex subunit 4 |
| Arabidopsis | AT2G01120 (ORC4)origin recognition complex subunit 4 [Source:NCBI gene (formerly Entrezgene);Acc:814641] identity=66.2; qcov=0.991; evalue=3.48e-161; confidence=high |
| Rice | Os01g0683400 (OsORC4)- identity=65.4; qcov=0.994; evalue=8.74e-164; confidence=high |
| GO | GO:0003688 (DNA replication origin binding); GO:0005634 (nucleus); GO:0005664 (nuclear origin of replication recognition complex); GO:0006260 (DNA replication); GO:0006270 (DNA replication initiation) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF13191 (AAA_16); PF13401 (AAA_22); PF14629 (ORC4_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025113 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057810707.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057810707.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057810711.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057810707.1 |
| 5 | Centromere | 着丝粒 | 0.20000 | XP_057810711.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54490278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr5:54490393 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr5:54491280 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | D11 |
Chr5:54491280 |
TA |
T |
1bp_deletion | CDS_variant | 1 | D11 |
Chr5:54491429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B95,C11,C69 |
Chr5:54491471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,A24,C53,C76 |
Chr5:54491863 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr5:54491886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:54492074 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A7,B110,B58,C35 |
Chr5:54493409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B31,C48,C52,D11,D3 |
Chr5:54493412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B101,B115,B62,C43 |
Chr5:54494179 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810707.1PF13191
AAA_16 48-172 aa
PF13401
AAA_22 54-180 aa
PF00004
AAA 55-201 aa
PF14629
ORC4_C 216-400 aa
XP_057810708.1PF13191
AAA_16 48-172 aa
PF13401
AAA_22 54-180 aa
PF00004
AAA 55-201 aa
PF14629
ORC4_C 216-400 aa
XP_057810709.1PF13191
AAA_16 48-172 aa
PF13401
AAA_22 54-180 aa
PF00004
AAA 55-201 aa
PF14629
ORC4_C 216-400 aa
XP_057810710.1PF13191
AAA_16 48-172 aa
PF13401
AAA_22 54-180 aa
PF00004
AAA 55-201 aa
PF14629
ORC4_C 216-400 aa
XP_057810711.1PF14629
ORC4_C 134-318 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810707.1 |
Pfam | PF13191 |
AAA_16 | Domain | 48 | 172 | 2.9e-10 | 41.6 | AAA ATPase domain |
XP_057810707.1 |
Pfam | PF13401 |
AAA_22 | Domain | 54 | 180 | 4.6e-07 | 30.9 | AAA domain |
XP_057810707.1 |
Pfam | PF00004 |
AAA | Domain | 55 | 201 | 1.1e-06 | 29.8 | ATPase family associated with various cellular activities (AAA) |
XP_057810707.1 |
Pfam | PF14629 |
ORC4_C | Family | 216 | 400 | 3.5e-44 | 151.5 | Origin recognition complex (ORC) subunit 4 C-terminus |
XP_057810708.1 |
Pfam | PF13191 |
AAA_16 | Domain | 48 | 172 | 2.9e-10 | 41.6 | AAA ATPase domain |
XP_057810708.1 |
Pfam | PF13401 |
AAA_22 | Domain | 54 | 180 | 4.6e-07 | 30.9 | AAA domain |
XP_057810708.1 |
Pfam | PF00004 |
AAA | Domain | 55 | 201 | 1.1e-06 | 29.8 | ATPase family associated with various cellular activities (AAA) |
XP_057810708.1 |
Pfam | PF14629 |
ORC4_C | Family | 216 | 400 | 3.5e-44 | 151.5 | Origin recognition complex (ORC) subunit 4 C-terminus |
XP_057810709.1 |
Pfam | PF13191 |
AAA_16 | Domain | 48 | 172 | 2.9e-10 | 41.6 | AAA ATPase domain |
XP_057810709.1 |
Pfam | PF13401 |
AAA_22 | Domain | 54 | 180 | 4.6e-07 | 30.9 | AAA domain |
XP_057810709.1 |
Pfam | PF00004 |
AAA | Domain | 55 | 201 | 1.1e-06 | 29.8 | ATPase family associated with various cellular activities (AAA) |
XP_057810709.1 |
Pfam | PF14629 |
ORC4_C | Family | 216 | 400 | 3.5e-44 | 151.5 | Origin recognition complex (ORC) subunit 4 C-terminus |
XP_057810710.1 |
Pfam | PF13191 |
AAA_16 | Domain | 48 | 172 | 2.9e-10 | 41.6 | AAA ATPase domain |
XP_057810710.1 |
Pfam | PF13401 |
AAA_22 | Domain | 54 | 180 | 4.6e-07 | 30.9 | AAA domain |
XP_057810710.1 |
Pfam | PF00004 |
AAA | Domain | 55 | 201 | 1.1e-06 | 29.8 | ATPase family associated with various cellular activities (AAA) |
XP_057810710.1 |
Pfam | PF14629 |
ORC4_C | Family | 216 | 400 | 3.5e-44 | 151.5 | Origin recognition complex (ORC) subunit 4 C-terminus |
XP_057810711.1 |
Pfam | PF14629 |
ORC4_C | Family | 134 | 318 | 2.3e-44 | 152.1 | Origin recognition complex (ORC) subunit 4 C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。