Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G004058

染色体: Chr05 坐标: 54538840-54543137 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G004058
名称SmilChr05G004058
描述GDSL esterase/lipase 6
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向54538840 - 54543137 / +

ID 对照

NCBI Gene IDLOC131025121
GeneID131025121
locus_tag-
NCBI NameLOC131025121
原始查询SmilChr05G004058

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述GDSL esterase/lipase 6
产物GDSL esterase/lipase 6
ArabidopsisAT1G71120 (GLIP6)
GDSL-motif lipase/hydrolase 6 [Source:NCBI gene (formerly Entrezgene);Acc:843452]
identity=64.5; qcov=0.938; evalue=1.99e-154; confidence=high
RiceOs09g0132200 (OsGELP97)
-
identity=33.5; qcov=0.935; evalue=1.59e-57; confidence=low
GOGO:0006629 (lipid metabolic process); GO:0016298 (lipase activity)
KEGG-
PfamPF00657 (Lipase_GDSL)
InterPro-
eggNOG-
NRGeneID:131025121

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Secreted 分泌到胞外 1.00000 XP_057810719.1
2 Nucleus 细胞核 0.00000 XP_057810719.1
3 Chromosome 染色体 0.00000 XP_057810719.1
4 Centromere 着丝粒 0.00000 XP_057810719.1
5 Chromatin 染色质 0.00000 XP_057810719.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:54539619 G A EMS_canonical_SNV CDS_variant 1 B140
Chr5:54539652 C T EMS_canonical_SNV CDS_variant 1 B122
Chr5:54539657 G A EMS_canonical_SNV CDS_variant 1 B45
Chr5:54541190 G A EMS_canonical_SNV CDS_variant 1 C29
Chr5:54541223 CAA C 2bp_deletion frameshift_variant 2 A10,D4
Chr5:54541223 CAA C 2bp_deletion CDS_variant 2 A10,D4
Chr5:54541245 G A EMS_canonical_SNV CDS_variant 2 B55,B78
Chr5:54541441 C T EMS_canonical_SNV CDS_variant 1 B41
Chr5:54541445 C T EMS_canonical_SNV CDS_variant 3 B7,C2,D4
Chr5:54541477 CG C 1bp_deletion frameshift_variant 1 D11
Chr5:54541477 CG C 1bp_deletion CDS_variant 1 D11
Chr5:54541636 TG T 1bp_deletion CDS_variant 1 B115

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057810719.1
354 aa
N
1
177
354
Lipase_GDSL
C
PF00657 Lipase_GDSL 27-332 aa
XP_057810720.1
354 aa
N
1
177
354
Lipase_GDSL
C
PF00657 Lipase_GDSL 27-332 aa
XP_057810721.1
354 aa
N
1
177
354
Lipase_GDSL
C
PF00657 Lipase_GDSL 27-332 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810719.1 Pfam PF00657 Lipase_GDSL Family 27 332 4.1e-36 125.8 GDSL-like Lipase/Acylhydrolase
XP_057810720.1 Pfam PF00657 Lipase_GDSL Family 27 332 4.1e-36 125.8 GDSL-like Lipase/Acylhydrolase
XP_057810721.1 Pfam PF00657 Lipase_GDSL Family 27 332 4.1e-36 125.8 GDSL-like Lipase/Acylhydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057954736.1
AAATTACTTTTCTTGGAAATCAAAGTAGACACTTTTCTCACATTGAACAGAAAGCAAAATAAAGCTAATGAAGTTTTTTTTTTTTTTTCTTTCTCTAAATGAATGCAAATAGTAACATAAATAAGAAAACAACAAAAAAAATGCTGTTGAAGGTTGAGAGATGGCATAATCAATACGCTAATGTTGAAGAAGCCAGACATGCATGCATTTAGTTTTCGCTGCTTGTTTTAGCTATTTCGTCTTCATCCTCAACTTCTCCA...
XM_057954738.1
TTTTCTTGGAAATCAAACACTCGTAATTGAATGGAGACGCAATTGCTCTTCATCTCCGTCAATCTATTCCTTCTAGCAGCTCCCGCAATCGGATCTACCTCTCCACCAATTTTCATTTTCGGCGATTCGATCCTCGACGCCGGGAACAATCACTACAACCCTAATTGCACCGTTCAGGCCGATTTCCCGCCGTACGGATCCACCTTCTTCCGCCGCCCCACCGGAAGATTCACCAATGGCAGAACCGTCGCCGACTTCAT...

CDS

3 records

下载 CDS FASTA
LOC131025121
ATGGAGACGCAATTGCTCTTCATCTCCGTCAATCTATTCCTTCTAGCAGCTCCCGCAATCGGATCTACCTCTCCACCAATTTTCATTTTCGGCGATTCGATCCTCGACGCCGGGAACAATCACTACAACCCTAATTGCACCGTTCAGGCCGATTTCCCGCCGTACGGATCCACCTTCTTCCGCCGCCCCACCGGAAGATTCACCAATGGCAGAACCGTCGCCGACTTCATCTCTGAGTTTTTGCGCATTCCTCTGCAAAA...
LOC131025121
ATGGAGACGCAATTGCTCTTCATCTCCGTCAATCTATTCCTTCTAGCAGCTCCCGCAATCGGATCTACCTCTCCACCAATTTTCATTTTCGGCGATTCGATCCTCGACGCCGGGAACAATCACTACAACCCTAATTGCACCGTTCAGGCCGATTTCCCGCCGTACGGATCCACCTTCTTCCGCCGCCCCACCGGAAGATTCACCAATGGCAGAACCGTCGCCGACTTCATCTCTGAGTTTTTGCGCATTCCTCTGCAAAA...

Protein

3 records

下载 Protein FASTA
XP_057810719.1
METQLLFISVNLFLLAAPAIGSTSPPIFIFGDSILDAGNNHYNPNCTVQADFPPYGSTFFRRPTGRFTNGRTVADFISEFLRIPLQKPYMEIMNGSEKNFPANGINFASAGSGVLPATNNFFGVTPIQVQVQQFQSLVAQNKIGKKGVKDSMIFIESGSNDIYNYFYPLDPPTLTPDAYVQSMVAQVGHLVDAVYNLGGRRVAVFGLGPVGCVPARSLLHGAPLGKCYGKMNKMVKNYNMGLQNLVNALPRSHPGAVAVF...
XP_057810720.1
METQLLFISVNLFLLAAPAIGSTSPPIFIFGDSILDAGNNHYNPNCTVQADFPPYGSTFFRRPTGRFTNGRTVADFISEFLRIPLQKPYMEIMNGSEKNFPANGINFASAGSGVLPATNNFFGVTPIQVQVQQFQSLVAQNKIGKKGVKDSMIFIESGSNDIYNYFYPLDPPTLTPDAYVQSMVAQVGHLVDAVYNLGGRRVAVFGLGPVGCVPARSLLHGAPLGKCYGKMNKMVKNYNMGLQNLVNALPRSHPGAVAVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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