Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004080`

染色体: Chr05 坐标: 54671255-54676015 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004080`
名称	SmilChr05G004080
描述	UDP-glucuronic acid decarboxylase 6-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	54671255 - 54676015 / `+`

ID 对照

NCBI Gene ID	`LOC131025143`
GeneID	`131025143`
locus_tag	`-`
NCBI Name	`LOC131025143`
原始查询	`SmilChr05G004080`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-glucuronic acid decarboxylase 6-like
产物	UDP-glucuronic acid decarboxylase 6-like
Arabidopsis	`AT2G28760` (UXS6) UDP-XYL synthase 6 [Source:NCBI gene (formerly Entrezgene);Acc:817426] identity=85.8; qcov=1; evalue=0; confidence=high
Rice	`Os03g0278000` (UXS) - identity=83.4; qcov=0.997; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0042732 (D-xylose metabolic process); GO:0048040 (UDP-glucuronate decarboxylase activity); GO:0070403 (NAD+ binding)
KEGG	smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131025143

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810745.1`
2	Cytoplasm	细胞质	0.80000	`XP_057810745.1`
3	Nucleus	细胞核	0.20000	`XP_057810745.1`
4	Chromosome	染色体	0.00000	`XP_057810745.1`
5	Centromere	着丝粒	0.00000	`XP_057810745.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:54673359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B87,C44,C77,D9
`Chr5:54674180`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr5:54675178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr5:54675490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B78,B95,C71
`Chr5:54675763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B125

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810745.1

344 aa

172

344

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 32-295 aa PF02719 Polysacc_synt_2 34-143 aa PF01370 Epimerase 34-268 aa PF01073 3Beta_HSD 35-186 aa PF16363 GDP_Man_Dehyd 35-329 aa PF07993 NAD_binding_4 90-207 aa

XP_057810746.1

344 aa

172

344

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 32-295 aa PF02719 Polysacc_synt_2 34-143 aa PF01370 Epimerase 34-268 aa PF01073 3Beta_HSD 35-186 aa PF16363 GDP_Man_Dehyd 35-329 aa PF07993 NAD_binding_4 90-207 aa

XP_057810747.1

344 aa

172

344

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 32-295 aa PF02719 Polysacc_synt_2 34-143 aa PF01370 Epimerase 34-268 aa PF01073 3Beta_HSD 35-186 aa PF16363 GDP_Man_Dehyd 35-329 aa PF07993 NAD_binding_4 90-207 aa

XP_057810748.1

344 aa

172

344

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 32-295 aa PF02719 Polysacc_synt_2 34-143 aa PF01370 Epimerase 34-268 aa PF01073 3Beta_HSD 35-186 aa PF16363 GDP_Man_Dehyd 35-329 aa PF07993 NAD_binding_4 90-207 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810745.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	32	295	3.2e-08	33.7	RmlD substrate binding domain
`XP_057810745.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	34	143	6.2e-13	49.3	Polysaccharide biosynthesis protein
`XP_057810745.1`	Pfam	`PF01370`	Epimerase	Family	34	268	1.4e-45	156.3	NAD dependent epimerase/dehydratase family
`XP_057810745.1`	Pfam	`PF01073`	3Beta_HSD	Family	35	186	2.9e-12	46.9	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057810745.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	35	329	2.1e-50	172.8	GDP-mannose 4,6 dehydratase
`XP_057810745.1`	Pfam	`PF07993`	NAD_binding_4	Family	90	207	1.1e-12	48.4	Male sterility protein
`XP_057810746.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	32	295	3.2e-08	33.7	RmlD substrate binding domain
`XP_057810746.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	34	143	6.2e-13	49.3	Polysaccharide biosynthesis protein
`XP_057810746.1`	Pfam	`PF01370`	Epimerase	Family	34	268	1.4e-45	156.3	NAD dependent epimerase/dehydratase family
`XP_057810746.1`	Pfam	`PF01073`	3Beta_HSD	Family	35	186	2.9e-12	46.9	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057810746.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	35	329	2.1e-50	172.8	GDP-mannose 4,6 dehydratase
`XP_057810746.1`	Pfam	`PF07993`	NAD_binding_4	Family	90	207	1.1e-12	48.4	Male sterility protein
`XP_057810747.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	32	295	3.2e-08	33.7	RmlD substrate binding domain
`XP_057810747.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	34	143	6.2e-13	49.3	Polysaccharide biosynthesis protein
`XP_057810747.1`	Pfam	`PF01370`	Epimerase	Family	34	268	1.4e-45	156.3	NAD dependent epimerase/dehydratase family
`XP_057810747.1`	Pfam	`PF01073`	3Beta_HSD	Family	35	186	2.9e-12	46.9	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057810747.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	35	329	2.1e-50	172.8	GDP-mannose 4,6 dehydratase
`XP_057810747.1`	Pfam	`PF07993`	NAD_binding_4	Family	90	207	1.1e-12	48.4	Male sterility protein
`XP_057810748.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	32	295	3.2e-08	33.7	RmlD substrate binding domain
`XP_057810748.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	34	143	6.2e-13	49.3	Polysaccharide biosynthesis protein
`XP_057810748.1`	Pfam	`PF01370`	Epimerase	Family	34	268	1.4e-45	156.3	NAD dependent epimerase/dehydratase family
`XP_057810748.1`	Pfam	`PF01073`	3Beta_HSD	Family	35	186	2.9e-12	46.9	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057810748.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	35	329	2.1e-50	172.8	GDP-mannose 4,6 dehydratase
`XP_057810748.1`	Pfam	`PF07993`	NAD_binding_4	Family	90	207	1.1e-12	48.4	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057954763.1
AAAATAATATTTCCCCATTTTAATTGGCACATGCATAATTGCATATCGAGTTTTGGTGTGGAGTAACGTCGAAGTTGTTGAGTTCAGAACTGAAGAGGAAATCGTAGAAATGGCCAAGGAGGCATCGAATGGAAGCCATATATCGACCAAGCCACCTCCTGAGCCTTCACCATTGCGAAGAGCAAAATTCTTTCAGGCAAACATGAGAATTCTGGTTACTGGTGGGGCTGGATTCATTGGCTCTCACTTAGTTGATAAAC...

XM_057954762.1
CACTGCAAAATTAATTTGCAAGTTTTCTCTAATCTTAAAGATTCTCTTCTCCTCTCAATCTCTCTTTCCTACCCGTTTGGTAATCGTTAGGTGCAATGCTAGATTAATCATAATCGCCATTTATTTATATTTTATTTTATCCATTCCAATCGCTTTCTCGAATTTTTGCATTAAATTATCAATTTCTACATTTTCTCCTGTTTTAATTCGTGGGCTTTGGAGACGAGACGAGAATTGCGTCGTGTAGTATATAAAGGTCA...

CDS

4 records

下载 CDS FASTA

LOC131025143
ATGGCCAAGGAGGCATCGAATGGAAGCCATATATCGACCAAGCCACCTCCTGAGCCTTCACCATTGCGAAGAGCAAAATTCTTTCAGGCAAACATGAGAATTCTGGTTACTGGTGGGGCTGGATTCATTGGCTCTCACTTAGTTGATAAACTGATGCAAAATGAAAAGAATGAGGTGATTGTTGTGGATAACTACTTCACTGGCTCAAAGGATAACTTAAGCCAATGGATTGGCCATCCAAGATTTGAGCTTATCCGACA...

Protein

4 records

下载 Protein FASTA

XP_057810745.1
MAKEASNGSHISTKPPPEPSPLRRAKFFQANMRILVTGGAGFIGSHLVDKLMQNEKNEVIVVDNYFTGSKDNLSQWIGHPRFELIRHDVTEPLLVEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQTEDYWGNVNPIGVRSCYDEGKRVAETLMYDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFLAQAIRDEPLTVQLPGTQTRSFCYVSDMVDGLIRLMEGD...

XP_057810746.1
MAKEASNGSHISTKPPPEPSPLRRAKFFQANMRILVTGGAGFIGSHLVDKLMQNEKNEVIVVDNYFTGSKDNLSQWIGHPRFELIRHDVTEPLLVEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQTEDYWGNVNPIGVRSCYDEGKRVAETLMYDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFLAQAIRDEPLTVQLPGTQTRSFCYVSDMVDGLIRLMEGD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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