Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004086`

染色体: Chr05 坐标: 54701364-54705575 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004086`
名称	SmilChr05G004086
描述	alpha/beta hydrolase domain-containing protein VTE7
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	54701364 - 54705575 / `+`

ID 对照

NCBI Gene ID	`LOC131025147`
GeneID	`131025147`
locus_tag	`-`
NCBI Name	`LOC131025147`
原始查询	`SmilChr05G004086`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta hydrolase domain-containing protein VTE7
产物	alpha/beta hydrolase domain-containing protein VTE7
Arabidopsis	`AT1G13820` (AT1G13820) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837943] identity=62.1; qcov=0.954; evalue=4.94e-141; confidence=high
Rice	`Os03g0388800` - identity=28.9; qcov=0.79; evalue=3.53e-14; confidence=low
GO	GO:0003824 (catalytic activity)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131025147

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057810752.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057810752.1`
3	Chloroplast stroma	叶绿体基质	0.80000	`XP_057810753.1`
4	Chloroplast thylakoid	类囊体	0.40000	`XP_057810753.1`
5	Nucleus	细胞核	0.00000	`XP_057810752.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:54701768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B1,B2
`Chr5:54702293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr5:54702301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B21
`Chr5:54703361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A24,B119,B124,B65,B7
`Chr5:54703989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr5:54704246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B115,B40
`Chr5:54704261`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A25,B26,B52,B61,B77
`Chr5:54704381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A25,B26,B52,B61,B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810752.1

360 aa

180

360

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

Abhydrolase_1

PF00561 Abhydrolase_1 86-194 aa PF12146 Hydrolase_4 87-316 aa PF12697 Abhydrolase_6 87-321 aa PF00561 Abhydrolase_1 265-317 aa

XP_057810753.1

329 aa

164

329

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

Abhydrolase_1

PF00561 Abhydrolase_1 86-185 aa PF12146 Hydrolase_4 87-188 aa PF12697 Abhydrolase_6 87-290 aa PF00561 Abhydrolase_1 234-286 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810752.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	86	194	4e-20	73.2	alpha/beta hydrolase fold
`XP_057810752.1`	Pfam	`PF12146`	Hydrolase_4	Domain	87	316	6e-14	52.7	Serine aminopeptidase, S33
`XP_057810752.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	87	321	1.4e-14	55.9	Alpha/beta hydrolase family
`XP_057810752.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	265	317	4e-20	73.2	alpha/beta hydrolase fold
`XP_057810753.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	86	185	5.1e-20	72.9	alpha/beta hydrolase fold
`XP_057810753.1`	Pfam	`PF12146`	Hydrolase_4	Domain	87	188	1.2e-13	51.7	Serine aminopeptidase, S33
`XP_057810753.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	87	290	1.8e-12	49.1	Alpha/beta hydrolase family
`XP_057810753.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	234	286	5.1e-20	72.9	alpha/beta hydrolase fold

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954769.1
GACTCATCGGGATAGGGATAAAAAATAGAAATTCCATACGCATAAAACACATGTTGGAAGCGTTACCACGGAGAGGATGGGCCCCACCCCACCCCACCCACCTTTTCGCGCCATTTACACAGAGGTCCGATGAAGTATAAATAGGCTATAATTAAGGTCCACATATTGACATAGCGCCAGCCCATTTACCCGCCCCGGAATATATTTCGGGTTGACCCACGATGCTCATAGCCAGCGCCGCGCTGCCCCCGCCGCTTGTG...

XM_057954770.1
ATAGGGATAAAAAATAGAAATTCCATACGCATAAAACACATGTTGGAAGCGTTACCACGGAGAGGATGGGCCCCACCCCACCCCACCCACCTTTTCGCGCCATTTACACAGAGGTCCGATGAAGTATAAATAGGCTATAATTAAGGTCCACATATTGACATAGCGCCAGCCCATTTACCCGCCCCGGAATATATTTCGGGTTGACCCACGATGCTCATAGCCAGCGCCGCGCTGCCCCCGCCGCTTGTGGGACCCAAATC...

CDS

2 records

下载 CDS FASTA

LOC131025147
ATGCTCATAGCCAGCGCCGCGCTGCCCCCGCCGCTTGTGGGACCCAAATCCGCCGCGAAATTCAGTCCAAGGCAAAGCTTCATAACCTCAGCCACCGATTTTCCCTCATTTCTCCCTAAACAAATGGAGAGTATTAGAGACCCTTTCGCCAGGAAGCTGGCTTCCAGGATTCAGCGACTGCCCGTAGATCTAAGTTTGTCGGGGACTCGCGTAATGAGTAGCTGCATACAGCCGAAAACACAGCTTAATACAGTTCCACT...

Protein

2 records

下载 Protein FASTA

XP_057810752.1
MLIASAALPPPLVGPKSAAKFSPRQSFITSATDFPSFLPKQMESIRDPFARKLASRIQRLPVDLSLSGTRVMSSCIQPKTQLNTVPLVLLHGFDSSCFEWRYGLPLLEEAGFETWAVDVLGWGFSDLEKLPSCSVASKRDHLYQFWSSYIKRPMTLVGPSLGAAVAIDFAVNHPEAVDKLILIDASVYAEGTGHLATLPKVMAYAGVYLLKSLPLRLCATLLAFNSLTWDTCYEWAKIGRLHCLLPWWTDATVDFMTSGG...

XP_057810753.1
MLIASAALPPPLVGPKSAAKFSPRQSFITSATDFPSFLPKQMESIRDPFARKLASRIQRLPVDLSLSGTRVMSSCIQPKTQLNTVPLVLLHGFDSSCFEWRYGLPLLEEAGFETWAVDVLGWGFSDLEKLPSCSVASKRDHLYQFWSSYIKRPMTLVGPSLGAAVAIDFAVNHPEAVDKLILIDASVYAEGTGHLATLPKVMAYAGIGRLHCLLPWWTDATVDFMTSGGYNVSAQIGQVKQKTLIIWGENDQIIDYKLAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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