当前解析结果
SmilChr05G004099| 统一新 Gene ID | SmilChr05G004099 |
|---|---|
| 名称 | SmilChr05G004099 |
| 描述 | uncharacterized SmilChr05G004099 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54847336 - 54849783 / + |
| NCBI Gene ID | LOC131025160 |
|---|---|
| GeneID | 131025160 |
| locus_tag | - |
| NCBI Name | LOC131025160 |
| 原始查询 | SmilChr05G004099 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:814872]; symbol=AT2G03430; hit=AT2G03430; species=arabidopsis; confidence=high |
| 产物 | Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:814872]; symbol=AT2G03430; hit=AT2G03430; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G03430 (AT2G03430)Ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:814872] identity=64; qcov=1.01; evalue=1.48e-111; confidence=high |
| Rice | Os03g0758400- identity=65.6; qcov=0.958; evalue=6.81e-101; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025160 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810773.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057810773.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057810773.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810773.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810773.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54847497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:54847502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,C71 |
Chr5:54847527 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,B66,B87,C37,C67 |
Chr5:54847532 |
TG |
T |
1bp_deletion | frameshift_variant | 114 | A15,A21,A3,A8,B100,B101,B102,B103,B106,B107,B109,B113,B114,B115,B119,B12,B121,B123,B125,B13,B130,B131,B135,B136,B15,B16,B19,B2,B23,B24,B27,B28,B29,B34,B35,B36,B37,B39,B4,B40,B42,B43,B47,B50,B54,B56,B62,B66,B69,B7,B70,B71,B72,B73,B74,B76,B78,B79,B8,B83,B86,B87,B9,B91,B92,B95,B96,B99,C10,C11,C12,C13,C16,C17,C18,C23,C24,C25,C27,C29,C3,C30,C31,C33,C37,C44,C45,C46,C47,C48,C49,C5,C50,C53,C56,C6,C63,C64,C65,C67,C68,C69,C71,C72,C82,C83,C84,C87,D10,D11,D2,D3,D6,D7 |
Chr5:54847540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B109,C76,D5 |
Chr5:54847623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr5:54848000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr5:54848018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B87,B96 |
Chr5:54848053 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr5:54848773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr5:54848833 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr5:54848839 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B110,B93,C12,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810773.1PF12796
Ank_2 15-110 aa
PF13637
Ank_4 50-100 aa
PF12796
Ank_2 73-143 aa
PF13606
Ank_3 79-108 aa
PF00023
Ank 80-111 aa
PF13637
Ank_4 84-132 aa
PF13857
Ank_5 103-153 aa
PF13606
Ank_3 113-141 aa
PF00023
Ank 113-144 aa
PF13637
Ank_4 126-166 aa
PF12796
Ank_2 140-209 aa
PF13606
Ank_3 145-173 aa
PF00023
Ank 146-176 aa
PF13857
Ank_5 165-218 aa
PF13606
Ank_3 179-207 aa
PF00023
Ank 179-210 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810773.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 15 | 110 | 4.8e-57 | 191.2 | Ankyrin repeats (3 copies) |
XP_057810773.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 50 | 100 | 1.6e-39 | 133.7 | Ankyrin repeats (many copies) |
XP_057810773.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 73 | 143 | 4.8e-57 | 191.2 | Ankyrin repeats (3 copies) |
XP_057810773.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 79 | 108 | 8.6e-34 | 112.1 | Ankyrin repeat |
XP_057810773.1 |
Pfam | PF00023 |
Ank | Repeat | 80 | 111 | 5.3e-43 | 143.3 | Ankyrin repeat |
XP_057810773.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 84 | 132 | 1.6e-39 | 133.7 | Ankyrin repeats (many copies) |
XP_057810773.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 103 | 153 | 2.6e-27 | 95.3 | Ankyrin repeats (many copies) |
XP_057810773.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 113 | 141 | 8.6e-34 | 112.1 | Ankyrin repeat |
XP_057810773.1 |
Pfam | PF00023 |
Ank | Repeat | 113 | 144 | 5.3e-43 | 143.3 | Ankyrin repeat |
XP_057810773.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 126 | 166 | 1.6e-39 | 133.7 | Ankyrin repeats (many copies) |
XP_057810773.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 140 | 209 | 4.8e-57 | 191.2 | Ankyrin repeats (3 copies) |
XP_057810773.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 145 | 173 | 8.6e-34 | 112.1 | Ankyrin repeat |
XP_057810773.1 |
Pfam | PF00023 |
Ank | Repeat | 146 | 176 | 5.3e-43 | 143.3 | Ankyrin repeat |
XP_057810773.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 165 | 218 | 2.6e-27 | 95.3 | Ankyrin repeats (many copies) |
XP_057810773.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 179 | 207 | 8.6e-34 | 112.1 | Ankyrin repeat |
XP_057810773.1 |
Pfam | PF00023 |
Ank | Repeat | 179 | 210 | 5.3e-43 | 143.3 | Ankyrin repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。