Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004106`

染色体: Chr05 坐标: 54920946-54924877 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004106`
名称	SmilChr05G004106
描述	probable WRKY transcription factor 4
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	54920946 - 54924877 / `+`

ID 对照

NCBI Gene ID	`LOC131025167`
GeneID	`131025167`
locus_tag	`-`
NCBI Name	`LOC131025167`
原始查询	`SmilChr05G004106`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable WRKY transcription factor 4
产物	probable WRKY transcription factor 4
Arabidopsis	`AT2G03340` (WRKY3) WRKY DNA-binding protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:814863] identity=53.9; qcov=1.07; evalue=4.8e-163; confidence=high
Rice	`Os12g0507300` (OsWRKY96) - identity=47.4; qcov=0.821; evalue=4.79e-109; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF03106 (WRKY)
InterPro	-
eggNOG	-
NR	GeneID:131025167

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810779.1`
2	Chromosome	染色体	0.00000	`XP_057810779.1`
3	Centromere	着丝粒	0.00000	`XP_057810779.1`
4	Chromatin	染色质	0.00000	`XP_057810779.1`
5	Telomere	端粒	0.00000	`XP_057810779.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:54921209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr5:54921216`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B14,B34
`Chr5:54921342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B137,B35
`Chr5:54921349`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B61
`Chr5:54921349`	`GC`	`G`	1bp_deletion	CDS_variant	1	B61
`Chr5:54921391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr5:54921452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A9,B71,C2,C45
`Chr5:54921468`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr5:54923312`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr5:54923332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr5:54923424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr5:54923432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C21,C3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810779.1

492 aa

246

492

WRKY

PF03106 WRKY 211-267 aa PF03106 WRKY 381-438 aa

XP_057810780.1

491 aa

246

491

WRKY

PF03106 WRKY 211-267 aa PF03106 WRKY 380-437 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810779.1`	Pfam	`PF03106`	WRKY	Domain	211	267	1e-55	186.5	WRKY DNA -binding domain
`XP_057810779.1`	Pfam	`PF03106`	WRKY	Domain	381	438	1e-55	186.5	WRKY DNA -binding domain
`XP_057810780.1`	Pfam	`PF03106`	WRKY	Domain	211	267	1e-55	186.5	WRKY DNA -binding domain
`XP_057810780.1`	Pfam	`PF03106`	WRKY	Domain	380	437	1e-55	186.5	WRKY DNA -binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057954797.1
AAGAAAAAAAGGGAATTTCAGTGCGCCGGAAAATGGAAAGCACATATATATATATATATAGAGAGAGAGAGAAGGAGAGAGAAAGAGGAAATTGCAAAACGACGACTTTGAGAAATTAGAAACCCAAAAAAGCAAAGGCTTTAAAACACCCAAAAAGCAATCGAAAGTCAAAGTGAGGCTGAATCCAATGGCTGGGAACAAGCCACCGCCATCGTCGTCGTCGTCCAAACCTCCGCCGTCGATCACTCTGCCGCCGCGAA...

XM_057954796.1
TATATATAGAGAGAGAGAGAAGGAGAGAGAAAGAGGAAATTGCAAAACGACGACTTTGAGAAATTAGAAACCCAAAAAAGCAAAGGCTTTAAAACACCCAAAAAGCAATCGAAAGTCAAAGTGAGGCTGAATCCAATGGCTGGGAACAAGCCACCGCCATCGTCGTCGTCGTCCAAACCTCCGCCGTCGATCACTCTGCCGCCGCGAACTTCAATCGAGAGCCTCTTCACCGGCGGGGCGGGCGCCAGCCCGGGGCCGAT...

CDS

2 records

下载 CDS FASTA

LOC131025167
ATGGCTGGGAACAAGCCACCGCCATCGTCGTCGTCGTCCAAACCTCCGCCGTCGATCACTCTGCCGCCGCGAACTTCAATCGAGAGCCTCTTCACCGGCGGGGCGGGCGCCAGCCCGGGGCCGATGAGCTTGGTCTCCAGCTTCTTCGCCGAGAACGACCCCGACAATGACTGCCGCTCCTTCTCTCAGCTCCTCGCCGGCGCCGTGCAGTCTCCGGCGGACGAGTTTAGGTTCCAGCAGAACAGGCCGGCCGTTCTGGC...

Protein

2 records

下载 Protein FASTA

XP_057810779.1
MAGNKPPPSSSSSKPPPSITLPPRTSIESLFTGGAGASPGPMSLVSSFFAENDPDNDCRSFSQLLAGAVQSPADEFRFQQNRPAVLAVSHPPGAGTFTVPPGLSPATLLDSPDLFSSSQGHFGLSHHQILAQISGQAQAQAQAQMQFQYSSFPSAPASSISHMQPIPSNASFQQHIPPPLPDTKNIKESSDFSQSDQKFQPANFAVDKPTDDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSLDGQITEIIY...

XP_057810780.1
MAGNKPPPSSSSSKPPPSITLPPRTSIESLFTGGAGASPGPMSLVSSFFAENDPDNDCRSFSQLLAGAVQSPADEFRFQQNRPAVLAVSHPPGAGTFTVPPGLSPATLLDSPDLFSSSQGHFGLSHHQILAQISGQAQAQAQAQMQFQYSSFPSAPASSISHMQPIPSNASFQQHIPPPLPDTKNIKESSDFSQSDQKFQPANFAVDKPTDDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSLDGQITEIIY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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