Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004120`

染色体: Chr05 坐标: 55108048-55113002 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004120`
名称	SmilChr05G004120
描述	serine/threonine-protein kinase VIK-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	55108048 - 55113002 / `+`

ID 对照

NCBI Gene ID	`LOC131025179`
GeneID	`131025179`
locus_tag	`-`
NCBI Name	`LOC131025179`
原始查询	`SmilChr05G004120`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein kinase VIK-like
产物	serine/threonine-protein kinase VIK-like
Arabidopsis	`AT1G14000` (VIK) VH1-interacting kinase [Source:NCBI gene (formerly Entrezgene);Acc:837960] identity=79.5; qcov=0.989; evalue=0; confidence=high
Rice	`Os07g0632800` - identity=78.4; qcov=0.909; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00023 (Ank); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4)
InterPro	-
eggNOG	-
NR	GeneID:131025179

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810801.1`
2	Cell membrane	细胞膜	1.00000	`XP_057810801.1`
3	Cytoplasm	细胞质	0.80000	`XP_057810801.1`
4	Nucleus	细胞核	0.00000	`XP_057810801.1`
5	Chromosome	染色体	0.00000	`XP_057810801.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:55108222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr5:55108224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr5:55108236`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr5:55108317`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B45,C43,C53
`Chr5:55108371`	`GC`	`G`	1bp_deletion	frameshift_variant	2	C44,C87
`Chr5:55108371`	`GC`	`G`	1bp_deletion	CDS_variant	2	C44,C87
`Chr5:55108373`	`GGA`	`G`	2bp_deletion	frameshift_variant	2	C44,C87
`Chr5:55108373`	`GGA`	`G`	2bp_deletion	CDS_variant	2	C44,C87
`Chr5:55110689`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B14
`Chr5:55110689`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr5:55110806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr5:55111429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,B5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810801.1

438 aa

219

438

Ank_4

Ank_2

Ank_3

Ank

Ank_4

Pkinase

PK_Tyr_Ser-Thr

PF13637 Ank_4 42-91 aa PF12796 Ank_2 43-127 aa PF13606 Ank_3 70-99 aa PF00023 Ank 70-102 aa PF13637 Ank_4 75-108 aa PF00069 Pkinase 164-418 aa PF07714 PK_Tyr_Ser-Thr 166-420 aa

XP_057810802.1

438 aa

219

438

Ank_4

Ank_2

Ank_3

Ank

Ank_4

Pkinase

PK_Tyr_Ser-Thr

PF13637 Ank_4 42-91 aa PF12796 Ank_2 43-127 aa PF13606 Ank_3 70-99 aa PF00023 Ank 70-102 aa PF13637 Ank_4 75-108 aa PF00069 Pkinase 164-418 aa PF07714 PK_Tyr_Ser-Thr 166-420 aa

XP_057810803.1

438 aa

219

438

Ank_4

Ank_2

Ank_3

Ank

Ank_4

Pkinase

PK_Tyr_Ser-Thr

PF13637 Ank_4 42-91 aa PF12796 Ank_2 43-127 aa PF13606 Ank_3 70-99 aa PF00023 Ank 70-102 aa PF13637 Ank_4 75-108 aa PF00069 Pkinase 164-418 aa PF07714 PK_Tyr_Ser-Thr 166-420 aa

XP_057810804.1

438 aa

219

438

Ank_4

Ank_2

Ank_3

Ank

Ank_4

Pkinase

PK_Tyr_Ser-Thr

PF13637 Ank_4 42-91 aa PF12796 Ank_2 43-127 aa PF13606 Ank_3 70-99 aa PF00023 Ank 70-102 aa PF13637 Ank_4 75-108 aa PF00069 Pkinase 164-418 aa PF07714 PK_Tyr_Ser-Thr 166-420 aa

XP_057810805.1

438 aa

219

438

Ank_4

Ank_2

Ank_3

Ank

Ank_4

Pkinase

PK_Tyr_Ser-Thr

PF13637 Ank_4 42-91 aa PF12796 Ank_2 43-127 aa PF13606 Ank_3 70-99 aa PF00023 Ank 70-102 aa PF13637 Ank_4 75-108 aa PF00069 Pkinase 164-418 aa PF07714 PK_Tyr_Ser-Thr 166-420 aa

XP_057810806.1

438 aa

219

438

Ank_4

Ank_2

Ank_3

Ank

Ank_4

Pkinase

PK_Tyr_Ser-Thr

PF13637 Ank_4 42-91 aa PF12796 Ank_2 43-127 aa PF13606 Ank_3 70-99 aa PF00023 Ank 70-102 aa PF13637 Ank_4 75-108 aa PF00069 Pkinase 164-418 aa PF07714 PK_Tyr_Ser-Thr 166-420 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810801.1`	Pfam	`PF13637`	Ank_4	Repeat	42	91	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810801.1`	Pfam	`PF12796`	Ank_2	Repeat	43	127	2.2e-09	38.5	Ankyrin repeats (3 copies)
`XP_057810801.1`	Pfam	`PF13606`	Ank_3	Repeat	70	99	3.4e-07	30.7	Ankyrin repeat
`XP_057810801.1`	Pfam	`PF00023`	Ank	Repeat	70	102	3.1e-08	34.1	Ankyrin repeat
`XP_057810801.1`	Pfam	`PF13637`	Ank_4	Repeat	75	108	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810801.1`	Pfam	`PF00069`	Pkinase	Domain	164	418	1.6e-56	192.4	Protein kinase domain
`XP_057810801.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	166	420	4.6e-63	213.6	Protein tyrosine and serine/threonine kinase
`XP_057810802.1`	Pfam	`PF13637`	Ank_4	Repeat	42	91	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810802.1`	Pfam	`PF12796`	Ank_2	Repeat	43	127	2.2e-09	38.5	Ankyrin repeats (3 copies)
`XP_057810802.1`	Pfam	`PF13606`	Ank_3	Repeat	70	99	3.4e-07	30.7	Ankyrin repeat
`XP_057810802.1`	Pfam	`PF00023`	Ank	Repeat	70	102	3.1e-08	34.1	Ankyrin repeat
`XP_057810802.1`	Pfam	`PF13637`	Ank_4	Repeat	75	108	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810802.1`	Pfam	`PF00069`	Pkinase	Domain	164	418	1.6e-56	192.4	Protein kinase domain
`XP_057810802.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	166	420	4.6e-63	213.6	Protein tyrosine and serine/threonine kinase
`XP_057810803.1`	Pfam	`PF13637`	Ank_4	Repeat	42	91	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810803.1`	Pfam	`PF12796`	Ank_2	Repeat	43	127	2.2e-09	38.5	Ankyrin repeats (3 copies)
`XP_057810803.1`	Pfam	`PF13606`	Ank_3	Repeat	70	99	3.4e-07	30.7	Ankyrin repeat
`XP_057810803.1`	Pfam	`PF00023`	Ank	Repeat	70	102	3.1e-08	34.1	Ankyrin repeat
`XP_057810803.1`	Pfam	`PF13637`	Ank_4	Repeat	75	108	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810803.1`	Pfam	`PF00069`	Pkinase	Domain	164	418	1.6e-56	192.4	Protein kinase domain
`XP_057810803.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	166	420	4.6e-63	213.6	Protein tyrosine and serine/threonine kinase
`XP_057810804.1`	Pfam	`PF13637`	Ank_4	Repeat	42	91	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810804.1`	Pfam	`PF12796`	Ank_2	Repeat	43	127	2.2e-09	38.5	Ankyrin repeats (3 copies)
`XP_057810804.1`	Pfam	`PF13606`	Ank_3	Repeat	70	99	3.4e-07	30.7	Ankyrin repeat
`XP_057810804.1`	Pfam	`PF00023`	Ank	Repeat	70	102	3.1e-08	34.1	Ankyrin repeat
`XP_057810804.1`	Pfam	`PF13637`	Ank_4	Repeat	75	108	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810804.1`	Pfam	`PF00069`	Pkinase	Domain	164	418	1.6e-56	192.4	Protein kinase domain
`XP_057810804.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	166	420	4.6e-63	213.6	Protein tyrosine and serine/threonine kinase
`XP_057810805.1`	Pfam	`PF13637`	Ank_4	Repeat	42	91	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810805.1`	Pfam	`PF12796`	Ank_2	Repeat	43	127	2.2e-09	38.5	Ankyrin repeats (3 copies)
`XP_057810805.1`	Pfam	`PF13606`	Ank_3	Repeat	70	99	3.4e-07	30.7	Ankyrin repeat
`XP_057810805.1`	Pfam	`PF00023`	Ank	Repeat	70	102	3.1e-08	34.1	Ankyrin repeat
`XP_057810805.1`	Pfam	`PF13637`	Ank_4	Repeat	75	108	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810805.1`	Pfam	`PF00069`	Pkinase	Domain	164	418	1.6e-56	192.4	Protein kinase domain
`XP_057810805.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	166	420	4.6e-63	213.6	Protein tyrosine and serine/threonine kinase
`XP_057810806.1`	Pfam	`PF13637`	Ank_4	Repeat	42	91	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810806.1`	Pfam	`PF12796`	Ank_2	Repeat	43	127	2.2e-09	38.5	Ankyrin repeats (3 copies)
`XP_057810806.1`	Pfam	`PF13606`	Ank_3	Repeat	70	99	3.4e-07	30.7	Ankyrin repeat
`XP_057810806.1`	Pfam	`PF00023`	Ank	Repeat	70	102	3.1e-08	34.1	Ankyrin repeat
`XP_057810806.1`	Pfam	`PF13637`	Ank_4	Repeat	75	108	4.8e-10	40.2	Ankyrin repeats (many copies)
`XP_057810806.1`	Pfam	`PF00069`	Pkinase	Domain	164	418	1.6e-56	192.4	Protein kinase domain
`XP_057810806.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	166	420	4.6e-63	213.6	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057954818.1
CGTGTTAAAAGTCAATCCGTAGTAGAAAAGTAAAAAATTTTGCAGGTTAAAATATGAGTAGCTCAAATCAGAGAGAGAGAAACCAAACAAAACGGTTACTAATTTGCGGGTTAACTCAGCAAAACGAACTGCCCCCAAAACCAAACAATTTCCGATCTCGGATCCATGAGCGGAGGCGAGGGCAGCTCGGGGCACTCTGCCGCCGGAGACGCGGCGCCGCCGCCCCCGCCGCCGGCCGACATAGAGAAGAAGAAAGAGAA...

XM_057954823.1
TCAGAGAGAGAGAAACCAAACAAAACGGTTACTAATTTGCGGGTTAACTCAGCAAAACGAACTGCCCCCAAAACCAAACAATTTCCGATCTCGGATCCATGAGCGGAGGCGAGGGCAGCTCGGGGCACTCTGCCGCCGGAGACGCGGCGCCGCCGCCCCCGCCGCCGGCCGACATAGAGAAGAAGAAAGAGAAGGCGCGCGTGAGCCGGACGTCGCTGATTCTGTGGCACGCGCACCAGAACGACACCGCGGCGGTGCGG...

CDS

6 records

下载 CDS FASTA

LOC131025179
ATGAGCGGAGGCGAGGGCAGCTCGGGGCACTCTGCCGCCGGAGACGCGGCGCCGCCGCCCCCGCCGCCGGCCGACATAGAGAAGAAGAAAGAGAAGGCGCGCGTGAGCCGGACGTCGCTGATTCTGTGGCACGCGCACCAGAACGACACCGCGGCGGTGCGGAAGCTGCTCGAGGAGGATCCGTCGCTGGTGGCCGCTAGAGACTACGACCACCGCACGCCGCTGCACGTGGCGGCGCTCCACGGCTGGATCGACGTCGC...

Protein

6 records

下载 Protein FASTA

XP_057810801.1
MSGGEGSSGHSAAGDAAPPPPPPADIEKKKEKARVSRTSLILWHAHQNDTAAVRKLLEEDPSLVAARDYDHRTPLHVAALHGWIDVAKCLIEFKADVNAQDRWKNTPLADAEGAKRSVMIELLKSHGGESYGQNGSHFEPRPVAPPLPNKCDWEIDPGELDFSNSTLVGKGSFGEILKASWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDKKPLMLVTEYLRGGDLHQHLKGKGALNPSTA...

XP_057810802.1
MSGGEGSSGHSAAGDAAPPPPPPADIEKKKEKARVSRTSLILWHAHQNDTAAVRKLLEEDPSLVAARDYDHRTPLHVAALHGWIDVAKCLIEFKADVNAQDRWKNTPLADAEGAKRSVMIELLKSHGGESYGQNGSHFEPRPVAPPLPNKCDWEIDPGELDFSNSTLVGKGSFGEILKASWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDKKPLMLVTEYLRGGDLHQHLKGKGALNPSTA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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