当前解析结果
SmilChr05G004129| 统一新 Gene ID | SmilChr05G004129 |
|---|---|
| 名称 | SmilChr05G004129 |
| 描述 | transcription factor MYB106-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 55228099 - 55230129 / - |
| NCBI Gene ID | LOC131025189 |
|---|---|
| GeneID | 131025189 |
| locus_tag | - |
| NCBI Name | LOC131025189 |
| 原始查询 | SmilChr05G004129 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB106-like |
| 产物 | transcription factor MYB106-like |
| Arabidopsis | AT3G01140 (MYB106)myb domain protein 106 [Source:NCBI gene (formerly Entrezgene);Acc:821209] identity=64; qcov=0.754; evalue=3.63e-100; confidence=high |
| Rice | Os08g0433400 (P0431A03.19-1)- identity=72; qcov=0.653; evalue=4.27e-100; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025189 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810814.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057810814.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057810814.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057810814.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057810814.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:55228335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,C35,C45 |
Chr5:55228401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr5:55228472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr5:55228502 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:55228534 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,D11 |
Chr5:55228537 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B115,B40 |
Chr5:55228574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,C56 |
Chr5:55228732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr5:55228745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:55228826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr5:55228857 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr5:55229995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810814.1PF00249
Myb_DNA-binding 14-61 aa
PF13921
Myb_DNA-bind_6 17-77 aa
PF00249
Myb_DNA-binding 67-111 aa
PF13921
Myb_DNA-bind_6 70-117 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810814.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 14 | 61 | 2.9e-37 | 127.2 | Myb-like DNA-binding domain |
XP_057810814.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 17 | 77 | 2.2e-22 | 79.7 | Myb-like DNA-binding domain |
XP_057810814.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 67 | 111 | 2.9e-37 | 127.2 | Myb-like DNA-binding domain |
XP_057810814.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 70 | 117 | 2.2e-22 | 79.7 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。