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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G004132

染色体: Chr05 坐标: 55299184-55301170 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G004132
名称SmilChr05G004132
描述uncharacterized SmilChr05G004132
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向55299184 - 55301170 / +

ID 对照

NCBI Gene IDLOC131025192
GeneID131025192
locus_tag-
NCBI NameLOC131025192
原始查询SmilChr05G004132

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cAMP-regulated phosphoprotein 19-related protein [Source:NCBI gene (formerly Entrezgene);Acc:836534]; symbol=AT5G64130; hit=AT5G64130; species=arabidopsis; confidence=medium
产物cAMP-regulated phosphoprotein 19-related protein [Source:NCBI gene (formerly Entrezgene);Acc:836534]; symbol=AT5G64130; hit=AT5G64130; species=arabidopsis; confidence=medium
ArabidopsisAT5G64130 (AT5G64130)
cAMP-regulated phosphoprotein 19-related protein [Source:NCBI gene (formerly Entrezgene);Acc:836534]
identity=56.9; qcov=0.785; evalue=8.58e-32; confidence=medium
RiceOs01g0249300 (P0434D08.2-1)
-
identity=59.8; qcov=0.631; evalue=2.48e-26; confidence=medium
GOGO:0004864 (protein phosphatase inhibitor activity); GO:0005737 (cytoplasm); GO:0035308 (GO:0035308)
KEGG-
PfamPF04667 (Endosulfine)
InterPro-
eggNOG-
NRGeneID:131025192

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057810817.1
2 Cytosol 细胞质基质 1.00000 XP_057810822.1
3 Nucleus 细胞核 0.40000 XP_057810817.1
4 Chromosome 染色体 0.00000 XP_057810817.1
5 Centromere 着丝粒 0.00000 XP_057810817.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:55300085 G A EMS_canonical_SNV CDS_variant 1 D11
Chr5:55300104 TAG T 2bp_deletion frameshift_variant 2 C70,D1
Chr5:55300104 TAG T 2bp_deletion CDS_variant 2 C70,D1
Chr5:55300177 C T EMS_canonical_SNV CDS_variant 2 B100,B30
Chr5:55300190 C T EMS_canonical_SNV CDS_variant 2 B18,B24
Chr5:55300372 G A EMS_canonical_SNV CDS_variant 3 B46,B53,C74
Chr5:55300408 G A EMS_canonical_SNV CDS_variant 3 B35,B51,C71
Chr5:55300420 G A EMS_canonical_SNV CDS_variant 2 B1,C78
Chr5:55300559 C T EMS_canonical_SNV CDS_variant 1 C5
Chr5:55300826 G A EMS_canonical_SNV CDS_variant 1 D3
Chr5:55300828 C T EMS_canonical_SNV CDS_variant 1 B102
Chr5:55300852 G GA 1bp_insertion frameshift_variant 120 A1,A19,A20,A22,A23,A25,A4,A8,B1,B10,B100,B101,B102,B103,B104,B105,B107,B108,B11,B111,B113,B114,B118,B120,B121,B128,B129,B13,B131,B133,B136,B138,B139,B16,B17,B18,B19,B2,B21,B22,B24,B26,B28,B29,B3,B30,B32,B33,B34,B36,B37,B44,B46,B48,B52,B53,B54,B55,B60,B61,B62,B65,B70,B71,B73,B75,B77,B78,B8,B81,B82,B88,B93,B95,B97,B99,C12,C13,C14,C19,C2,C20,C23,C24,C31,C33,C34,C36,C4,C42,C43,C46,C47,C49,C5,C51,C52,C53,C57,C6,C63,C64,C66,C67,C7,C70,C72,C74,C75,C76,C77,C78,C82,C83,C85,D11,D3,D5,D6,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810817.1
150 aa
N
1
75
150
Endosulfine
C
PF04667 Endosulfine 41-111 aa
XP_057810818.1
150 aa
N
1
75
150
Endosulfine
C
PF04667 Endosulfine 41-111 aa
XP_057810819.1
150 aa
N
1
75
150
Endosulfine
C
PF04667 Endosulfine 41-111 aa
XP_057810820.1
150 aa
N
1
75
150
Endosulfine
C
PF04667 Endosulfine 41-111 aa
XP_057810821.1
150 aa
N
1
75
150
Endosulfine
C
PF04667 Endosulfine 41-111 aa
XP_057810822.1
130 aa
N
1
65
130
Endosulfine
C
PF04667 Endosulfine 41-111 aa
XP_057810823.1
130 aa
N
1
65
130
Endosulfine
C
PF04667 Endosulfine 41-111 aa
XP_057810824.1
130 aa
N
1
65
130
Endosulfine
C
PF04667 Endosulfine 41-111 aa
XP_057810825.1
130 aa
N
1
65
130
Endosulfine
C
PF04667 Endosulfine 41-111 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810817.1 Pfam PF04667 Endosulfine Family 41 111 7.1e-19 68.4 cAMP-regulated phosphoprotein/endosulfine conserved region
XP_057810818.1 Pfam PF04667 Endosulfine Family 41 111 7.1e-19 68.4 cAMP-regulated phosphoprotein/endosulfine conserved region
XP_057810819.1 Pfam PF04667 Endosulfine Family 41 111 7.1e-19 68.4 cAMP-regulated phosphoprotein/endosulfine conserved region
XP_057810820.1 Pfam PF04667 Endosulfine Family 41 111 7.1e-19 68.4 cAMP-regulated phosphoprotein/endosulfine conserved region
XP_057810821.1 Pfam PF04667 Endosulfine Family 41 111 7.1e-19 68.4 cAMP-regulated phosphoprotein/endosulfine conserved region
XP_057810822.1 Pfam PF04667 Endosulfine Family 41 111 5.3e-19 68.8 cAMP-regulated phosphoprotein/endosulfine conserved region
XP_057810823.1 Pfam PF04667 Endosulfine Family 41 111 5.3e-19 68.8 cAMP-regulated phosphoprotein/endosulfine conserved region
XP_057810824.1 Pfam PF04667 Endosulfine Family 41 111 5.3e-19 68.8 cAMP-regulated phosphoprotein/endosulfine conserved region
XP_057810825.1 Pfam PF04667 Endosulfine Family 41 111 5.3e-19 68.8 cAMP-regulated phosphoprotein/endosulfine conserved region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA
XM_057954842.1
CCATCTGAGCTTCAACTTCAACGCAATCTCTCTTTTTTGAGAGAAAAATTGCTAGAATTTTTATCAGTCTCAGTTTCAGGCGCAAAGGGGGCGAGCATAGAAGATGGCCGAGAGAGATGATGATGAAGATAAAAAAGTTGTAGAGACTGCTCCAGATGCTGAGGGGGCTGAGGATTTGCCTATAGAAGAACCAAGAGAAGTCGATACGTGTGTCGAAAACCAAATGCCCTCGTTGCACAAGGAGGAGGAGGTCATCAAGA...
XM_057954838.1
CATCTGAGCTTCAACTTCAACGCAATCTCTCTTTTTTGAGAGAAAAATTGCTAGAATTTTTATCAGTCTCAGTTTCAGGCGCAAAGGGGGCGAGCATAGAAGATGGCCGAGAGAGATGATGATGAAGATAAAAAAGTTGTAGAGACTGCTCCAGATGCTGAGGGGGCTGAGGATTTGCCTATAGAAGAACCAAGAGAAGTCGATACGTGTGTCGAAAACCAAATGCCCTCGTTGCACAAGGAGGAGGAGGTCATCAAGAA...

CDS

9 records

下载 CDS FASTA
LOC131025192
ATGGCCGAGAGAGATGATGATGAAGATAAAAAAGTTGTAGAGACTGCTCCAGATGCTGAGGGGGCTGAGGATTTGCCTATAGAAGAACCAAGAGAAGTCGATACGTGTGTCGAAAACCAAATGCCCTCGTTGCACAAGGAGGAGGAGGTCATCAAGAAGAAGTATGGCGGCTTGCTGGCGAAGAAGCCTCCGTTGATCTCTAAGGATCATGAACGCGCTTTCTTTGACTCCGCGGATTGGGCTTTGGGCAAAAAGAGCAA...
LOC131025192
ATGGCCGAGAGAGATGATGATGAAGATAAAAAAGTTGTAGAGACTGCTCCAGATGCTGAGGGGGCTGAGGATTTGCCTATAGAAGAACCAAGAGAAGTCGATACGTGTGTCGAAAACCAAATGCCCTCGTTGCACAAGGAGGAGGAGGTCATCAAGAAGAAGTATGGCGGCTTGCTGGCGAAGAAGCCTCCGTTGATCTCTAAGGATCATGAACGCGCTTTCTTTGACTCCGCGGATTGGGCTTTGGGCAAAAAGAGCAA...

Protein

9 records

下载 Protein FASTA
XP_057810817.1
MAERDDDEDKKVVETAPDAEGAEDLPIEEPREVDTCVENQMPSLHKEEEVIKKKYGGLLAKKPPLISKDHERAFFDSADWALGKKSKGPIEALLQPKLQPSPHHQARSRSPCAPADDAQGESESESESESIHGGSCDHLNTGLSHENLQG
XP_057810818.1
MAERDDDEDKKVVETAPDAEGAEDLPIEEPREVDTCVENQMPSLHKEEEVIKKKYGGLLAKKPPLISKDHERAFFDSADWALGKKSKGPIEALLQPKLQPSPHHQARSRSPCAPADDAQGESESESESESIHGGSCDHLNTGLSHENLQG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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