Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G004181

染色体: Chr05 坐标: 55717150-55722067 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G004181
名称SmilChr05G004181
描述uncharacterized SmilChr05G004181
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向55717150 - 55722067 / -

ID 对照

NCBI Gene IDLOC131025233
GeneID131025233
locus_tag-
NCBI NameLOC131025233
原始查询SmilChr05G004181

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述heat-inducible transcription repressor [Source:NCBI gene (formerly Entrezgene);Acc:821058]; symbol=AT3G17900; hit=AT3G17900; species=arabidopsis; confidence=high
产物heat-inducible transcription repressor [Source:NCBI gene (formerly Entrezgene);Acc:821058]; symbol=AT3G17900; hit=AT3G17900; species=arabidopsis; confidence=high
ArabidopsisAT3G17900 (AT3G17900)
heat-inducible transcription repressor [Source:NCBI gene (formerly Entrezgene);Acc:821058]
identity=45.2; qcov=1.06; evalue=0; confidence=high
RiceOs03g0152800
-
identity=38.6; qcov=1.08; evalue=2.36e-154; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131025233

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.60000 XP_057810883.1
2 Cytosol 细胞质基质 0.60000 XP_057810883.1
3 Nucleus 细胞核 0.20000 XP_057810883.1
4 Cytoplasmic vesicle 细胞质囊泡 0.20000 XP_057810883.1
5 Autophagic vesicle Autophagic vesicle 0.20000 XP_057810883.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:55717530 C T EMS_canonical_SNV CDS_variant 1 D6
Chr5:55717781 G A EMS_canonical_SNV CDS_variant 5 A23,B13,B131,C31,D6
Chr5:55717787 C T EMS_canonical_SNV CDS_variant 1 D10
Chr5:55717815 C T EMS_canonical_SNV CDS_variant 1 D5
Chr5:55717862 G A EMS_canonical_SNV CDS_variant 1 C20
Chr5:55717878 C T EMS_canonical_SNV CDS_variant 3 B19,C10,C63
Chr5:55717885 C T EMS_canonical_SNV CDS_variant 5 A18,B115,B48,B73,B94
Chr5:55717920 G A EMS_canonical_SNV CDS_variant 4 B109,B121,C24,C72
Chr5:55718041 G A EMS_canonical_SNV CDS_variant 3 B112,B132,B28
Chr5:55718270 G A EMS_canonical_SNV CDS_variant 4 A23,B13,B131,C31
Chr5:55718303 G A EMS_canonical_SNV CDS_variant 2 A22,C25
Chr5:55718355 C T EMS_canonical_SNV CDS_variant 1 B62

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057954901.1
AAGAAAAGGCAATTTTTGCTTAACGAAAAGATCCTTTTGGAAAATTGAAAAAGCAAAGAGAATTTCTACTTTTGGGATCCATAATTCCTTAACGTAGTTTTGGAACAAACGTAAGAATAGTAAACTATGCAGAAGTATAGAAATATTTCTCTTTCAGAAAAAAATAATAAATACTAAATTACAGTGAGCTCCGGCGAATTTGAAGTTCCTTTTTTTTCCTCTGTGGCGCCGTGAAAATCCGATTATACCGAATCGCTTCG...
XM_057954900.1
TTTTGGAAAATTGAAAAAGCAAAGAGAATTTCTACTTTTGGGATCCATAATTCCTTAACGTAGTTTTGGAACAAACGTAAGAATAGTAAACTATGCAGAAGTATAGAAATATTTCTCTTTCAGAAAAAAATAATAAATACTAAATTACAGTGAGCTCCGGCGAATTTGAAGTTCCTTTTTTTTCCTCTGTGGCGCCGTGAAAATCCGATTATACCGAATCGCTTCGCCGCCGTTCGTATCGTACGAAGCGCCAGCTTCCG...

CDS

2 records

下载 CDS FASTA
LOC131025233
ATGGAAGGTCTAAGTGGAAGGAGTAGCTTTCAAATTGATAGCGATATTGATGTTGCCGAAGATGATGGATTGATAATCATTGCAGAAGATAAAATTCCTGACAATTGGCCAGACGCAGAGGACAAATGTTCCTACCGCGGTTTAGATCGTAACTTCGTTTTTGCTGGTGAACAGGTCCGATTACTCATATGTCTGTCTGAAAATAAGCACAATTCAGGAATTATTACACCCTCAGAAAATGTGGTTGGACAAAGGTCCCA...
LOC131025233
ATGGAAGGTCTAAGTGGAAGGAGTAGCTTTCAAATTGATAGCGATATTGATGTTGCCGAAGATGATGGATTGATAATCATTGCAGAAGATAAAATTCCTGACAATTGGCCAGACGCAGAGGACAAATGTTCCTACCGCGGTTTAGATCGTAACTTCGTTTTTGCTGGTGAACAGGTCCGATTACTCATATGTCTGTCTGAAAATAAGCACAATTCAGGAATTATTACACCCTCAGAAAATGTGGTTGGACAAAGGTCCCA...

Protein

2 records

下载 Protein FASTA
XP_057810883.1
MEGLSGRSSFQIDSDIDVAEDDGLIIIAEDKIPDNWPDAEDKCSYRGLDRNFVFAGEQVRLLICLSENKHNSGIITPSENVVGQRSHRENEEVVGGTNSFSHAKYANTDEQKDKNGEARGNSTHSQKDASTGESIPGNDDQRRHTDQLLQRFEDSHFFARIAESNEPLWSERSAQEACFKLMETCKEKLTGDSSETAQILKNKNPTSVVIDRGELHSPTSGGVARGAAKCFSLSNGDIVVILQVKVGVEFMMDPILEILQ...
XP_057810884.1
MEGLSGRSSFQIDSDIDVAEDDGLIIIAEDKIPDNWPDAEDKCSYRGLDRNFVFAGEQVRLLICLSENKHNSGIITPSENVVGQRSHRENEEVVGGTNSFSHAKYANTDEQKDKNGEARGNSTHSQKDASTGESIPGNDDQRRHTDQLLQRFEDSHFFARIAESNEPLWSERSAQEACFKLMETCKEKLTGDSSETAQILKNKNPTSVVIDRGELHSPTSGGVARGAAKCFSLSNGDIVVILQVKVGVEFMMDPILEILQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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