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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G004186

染色体: Chr05 坐标: 55775808-55778750 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G004186
名称SmilChr05G004186
描述pentatricopeptide repeat-containing protein At2g27610-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向55775808 - 55778750 / +

ID 对照

NCBI Gene IDLOC131025240
GeneID131025240
locus_tag-
NCBI NameLOC131025240
原始查询SmilChr05G004186

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g27610-like
产物pentatricopeptide repeat-containing protein At2g27610-like
ArabidopsisAT3G61170 (AT3G61170)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825289]
identity=53.2; qcov=0.96; evalue=0; confidence=high
RiceOs12g0552300 (PPS1)
-
identity=38.8; qcov=0.988; evalue=0; confidence=medium
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131025240

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057810891.1
2 Chloroplast 叶绿体 0.20000 XP_057810892.1
3 Nucleus 细胞核 0.00000 XP_057810891.1
4 Chromosome 染色体 0.00000 XP_057810891.1
5 Centromere 着丝粒 0.00000 XP_057810891.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:55776222 CTG C 2bp_deletion frameshift_variant 3 B100,C82,D7
Chr5:55776222 CTG C 2bp_deletion CDS_variant 3 B100,C82,D7
Chr5:55776291 C T EMS_canonical_SNV CDS_variant 1 D3
Chr5:55776306 C T EMS_canonical_SNV stop_gained 127 A11,A14,A16,A20,A21,A22,A24,A3,A5,A6,A8,B1,B10,B100,B102,B104,B105,B108,B11,B110,B111,B114,B121,B125,B126,B129,B133,B134,B135,B137,B139,B17,B22,B25,B26,B27,B28,B3,B34,B37,B40,B41,B47,B49,B5,B52,B53,B54,B57,B58,B59,B62,B65,B68,B7,B71,B73,B74,B76,B78,B79,B80,B83,B84,B85,B89,B90,B92,B93,B95,B99,C11,C13,C14,C15,C16,C18,C19,C2,C21,C22,C23,C24,C25,C26,C27,C29,C30,C31,C33,C34,C37,C38,C40,C41,C45,C47,C50,C52,C53,C56,C57,C6,C61,C62,C63,C64,C65,C67,C69,C70,C74,C75,C76,C77,C79,C8,C82,C83,C84,C9,D1,D2,D3,D4,D7,D8
Chr5:55776415 G A EMS_canonical_SNV CDS_variant 2 B83,C41
Chr5:55776545 G A EMS_canonical_SNV CDS_variant 2 C45,D10
Chr5:55776630 G A EMS_canonical_SNV CDS_variant 1 B13
Chr5:55776632 C T EMS_canonical_SNV CDS_variant 2 B45,C45
Chr5:55776650 T TAC 2bp_insertion frameshift_variant 1 B83
Chr5:55776650 T TAC 2bp_insertion CDS_variant 1 B83
Chr5:55776658 C T EMS_canonical_SNV CDS_variant 5 A16,B90,B92,C15,D3
Chr5:55776666 G A EMS_canonical_SNV CDS_variant 2 B24,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810891.1
792 aa
N
1
396
792
PPR
PPR_1
PPR
PPR
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR_1
PPR
E_motif
PPR
DYW_deaminase
C
PF01535 PPR 30-48 aa PF12854 PPR_1 48-75 aa PF01535 PPR 51-80 aa PF01535 PPR 82-112 aa PF01535 PPR 155-178 aa PF13041 PPR_2 182-221 aa PF01535 PPR 184-214 aa PF01535 PPR 257-282 aa PF13041 PPR_2 283-328 aa PF01535 PPR 285-313 aa PF01535 PPR 358-384 aa PF01535 PPR 386-415 aa PF01535 PPR 459-486 aa PF13041 PPR_2 484-532 aa PF13812 PPR_3 485-531 aa PF01535 PPR 487-517 aa PF13812 PPR_3 508-568 aa PF12854 PPR_1 552-584 aa PF01535 PPR 560-584 aa PF20431 E_motif 602-664 aa PF01535 PPR 626-654 aa PF14432 DYW_deaminase 700-792 aa
XP_057810892.1
748 aa
N
1
374
748
PPR_1
PPR
PPR
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR_1
PPR
E_motif
PPR
DYW_deaminase
C
PF12854 PPR_1 4-31 aa PF01535 PPR 7-36 aa PF01535 PPR 38-68 aa PF01535 PPR 111-134 aa PF13041 PPR_2 138-177 aa PF01535 PPR 140-170 aa PF01535 PPR 213-238 aa PF13041 PPR_2 239-284 aa PF01535 PPR 241-269 aa PF01535 PPR 314-340 aa PF01535 PPR 342-371 aa PF01535 PPR 415-442 aa PF13041 PPR_2 440-488 aa PF13812 PPR_3 441-487 aa PF01535 PPR 443-473 aa PF13812 PPR_3 464-524 aa PF12854 PPR_1 508-540 aa PF01535 PPR 516-540 aa PF20431 E_motif 558-620 aa PF01535 PPR 582-610 aa PF14432 DYW_deaminase 656-748 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810891.1 Pfam PF01535 PPR Repeat 30 48 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF12854 PPR_1 Repeat 48 75 2e-47 159.3 PPR repeat
XP_057810891.1 Pfam PF01535 PPR Repeat 51 80 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF01535 PPR Repeat 82 112 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF01535 PPR Repeat 155 178 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF13041 PPR_2 Repeat 182 221 2.2e-84 278.1 PPR repeat family
XP_057810891.1 Pfam PF01535 PPR Repeat 184 214 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF01535 PPR Repeat 257 282 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF13041 PPR_2 Repeat 283 328 2.2e-84 278.1 PPR repeat family
XP_057810891.1 Pfam PF01535 PPR Repeat 285 313 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF01535 PPR Repeat 358 384 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF01535 PPR Repeat 386 415 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF01535 PPR Repeat 459 486 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF13041 PPR_2 Repeat 484 532 2.2e-84 278.1 PPR repeat family
XP_057810891.1 Pfam PF13812 PPR_3 Repeat 485 531 1.8e-26 92.7 Pentatricopeptide repeat domain
XP_057810891.1 Pfam PF01535 PPR Repeat 487 517 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF13812 PPR_3 Repeat 508 568 1.8e-26 92.7 Pentatricopeptide repeat domain
XP_057810891.1 Pfam PF12854 PPR_1 Repeat 552 584 2e-47 159.3 PPR repeat
XP_057810891.1 Pfam PF01535 PPR Repeat 560 584 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF20431 E_motif Repeat 602 664 8.4e-21 74.7 E motif
XP_057810891.1 Pfam PF01535 PPR Repeat 626 654 1.2e-86 279.8 PPR repeat
XP_057810891.1 Pfam PF14432 DYW_deaminase Domain 700 792 1.6e-38 131.2 DYW family of nucleic acid deaminases
XP_057810892.1 Pfam PF12854 PPR_1 Repeat 4 31 9.1e-44 147.6 PPR repeat
XP_057810892.1 Pfam PF01535 PPR Repeat 7 36 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF01535 PPR Repeat 38 68 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF01535 PPR Repeat 111 134 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF13041 PPR_2 Repeat 138 177 3.6e-80 264.6 PPR repeat family
XP_057810892.1 Pfam PF01535 PPR Repeat 140 170 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF01535 PPR Repeat 213 238 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF13041 PPR_2 Repeat 239 284 3.6e-80 264.6 PPR repeat family
XP_057810892.1 Pfam PF01535 PPR Repeat 241 269 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF01535 PPR Repeat 314 340 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF01535 PPR Repeat 342 371 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF01535 PPR Repeat 415 442 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF13041 PPR_2 Repeat 440 488 3.6e-80 264.6 PPR repeat family
XP_057810892.1 Pfam PF13812 PPR_3 Repeat 441 487 1.3e-26 93.2 Pentatricopeptide repeat domain
XP_057810892.1 Pfam PF01535 PPR Repeat 443 473 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF13812 PPR_3 Repeat 464 524 1.3e-26 93.2 Pentatricopeptide repeat domain
XP_057810892.1 Pfam PF12854 PPR_1 Repeat 508 540 9.1e-44 147.6 PPR repeat
XP_057810892.1 Pfam PF01535 PPR Repeat 516 540 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF20431 E_motif Repeat 558 620 7.3e-21 74.9 E motif
XP_057810892.1 Pfam PF01535 PPR Repeat 582 610 6.8e-83 268.0 PPR repeat
XP_057810892.1 Pfam PF14432 DYW_deaminase Domain 656 748 1.4e-38 131.3 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057954908.1
TTGGGCCGCAGCTTCTTGATTTAGTGAATGGTAAAAGTTGGAAGCCGATTCCTCCCATTTCCCGACTTTCCTCCTCGGCTTTTCTCTACCGGCGCACTGTCCGTCTCTTTGTCGGAAGCCGCGCCGCCGTTGCCGACCACGCATTTGGCCGGACGGCACGTCGCCGCGTGAGTCGTGACTCCACTCCATTAGACGCCGCAACTCCTCTGCGAGCCTCAGACGCAGCAGCAGCAGCGCCGCCTCTTCTCCAGTCGCGTCGT...
XM_057954909.1
CCATTAGACGCCGCAACTCCTCTGCGAGCCTCAGACGCAGCAGCAGCAGCGCCGCCTCTTCTCCAGTCGCGTCGTGCATCCTCCGAGCTCCGGCACTCTGCGACGTTTCCGAAGATTAGTCCAATTCTCGCAGCGAGTCCACCATTGTTTGCTTGCGTTTCTCTAGCGGGAAAGATTTACTTTTCGATGCGAACAAGTATTTAACCGAGCTGCTGAAATCGGGCCGAATTGATGATGCGAGGAAACTGTTCGATGAAATG...

CDS

2 records

下载 CDS FASTA
LOC131025240
ATGAACAAATTTTCACTGCGTGGTTGCAGGCGTTTCTCTAGCGGGAAAGATTTACTTTTCGATGCGAACAAGTATTTAACCGAGCTGCTGAAATCGGGCCGAATTGATGATGCGAGGAAACTGTTCGATGAAATGCCTAACAGAGACGAGGTTACTTGGAACGCGATGATCGCCGGGTACGGGAATTCAGGGAGGCTCGTTGATGCACGGAAACTGTTTGATGAAGCCCCCAAACGCGGTGCAATCACATGGTCGTCACT...
LOC131025240
ATGCCTAACAGAGACGAGGTTACTTGGAACGCGATGATCGCCGGGTACGGGAATTCAGGGAGGCTCGTTGATGCACGGAAACTGTTTGATGAAGCCCCCAAACGCGGTGCAATCACATGGTCGTCACTTGTTTCCGGGTACTGCAAAATGGGATGCGAGGCCGAGACTTTTAAGTTGATCTACGAAATGCAGCTCGATGGATTCAAGCCTCGTCATTTTACTTTAGGAAGTGTGCTGAGAATGTGTTCTATAAAGGGTCT...

Protein

2 records

下载 Protein FASTA
XP_057810891.1
MNKFSLRGCRRFSSGKDLLFDANKYLTELLKSGRIDDARKLFDEMPNRDEVTWNAMIAGYGNSGRLVDARKLFDEAPKRGAITWSSLVSGYCKMGCEAETFKLIYEMQLDGFKPRHFTLGSVLRMCSIKGLISRGKQIHGSAVKTGLDMDAFVVTGLIDVYAKCLCIVDARDLFESMPGERNHVTWTAMITGYSQNGDADGTLRCFRDMRAEGVEANQYTFPGVLVSCAAVCDLRYGAQVHSCVVRGGFEANVFVQSALI...
XP_057810892.1
MPNRDEVTWNAMIAGYGNSGRLVDARKLFDEAPKRGAITWSSLVSGYCKMGCEAETFKLIYEMQLDGFKPRHFTLGSVLRMCSIKGLISRGKQIHGSAVKTGLDMDAFVVTGLIDVYAKCLCIVDARDLFESMPGERNHVTWTAMITGYSQNGDADGTLRCFRDMRAEGVEANQYTFPGVLVSCAAVCDLRYGAQVHSCVVRGGFEANVFVQSALIDMYTKCGDLSSAWRVVEAMEVDDLISCNAMIVGCVRQGCPEQAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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