Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G004188

染色体: Chr05 坐标: 55789551-55791698 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G004188
名称SmilChr05G004188
描述uncharacterized SmilChr05G004188
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向55789551 - 55791698 / -

ID 对照

NCBI Gene IDLOC131025242
GeneID131025242
locus_tag-
NCBI NameLOC131025242
原始查询SmilChr05G004188

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述small multi-drug export protein [Source:NCBI gene (formerly Entrezgene);Acc:814789]; symbol=AT2G02590; hit=AT2G02590; species=arabidopsis; confidence=high
产物small multi-drug export protein [Source:NCBI gene (formerly Entrezgene);Acc:814789]; symbol=AT2G02590; hit=AT2G02590; species=arabidopsis; confidence=high
ArabidopsisAT2G02590 (AT2G02590)
small multi-drug export protein [Source:NCBI gene (formerly Entrezgene);Acc:814789]
identity=64.7; qcov=0.884; evalue=2.58e-105; confidence=high
RiceOs03g0800500 (OSJNBa0052F07.9)
-
identity=55.7; qcov=0.952; evalue=1.62e-99; confidence=high
GOGO:0009507 (chloroplast)
KEGG-
PfamPF06695 (Sm_multidrug_ex)
InterPro-
eggNOG-
NRGeneID:131025242

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057810894.1
2 Chloroplast membrane 叶绿体膜 1.00000 XP_057810894.1
3 Chloroplast thylakoid 类囊体 0.60000 XP_057810894.1
4 Chloroplast thylakoid membrane 类囊体膜 0.20000 XP_057810894.1
5 Nucleus 细胞核 0.00000 XP_057810894.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:55789877 G A EMS_canonical_SNV CDS_variant 2 B19,B74
Chr5:55789924 C T EMS_canonical_SNV CDS_variant 4 A21,C27,C4,C46
Chr5:55791174 C T EMS_canonical_SNV CDS_variant 1 B73
Chr5:55791217 C T EMS_canonical_SNV CDS_variant 1 B73
Chr5:55791223 C T EMS_canonical_SNV CDS_variant 1 D11
Chr5:55791225 G A EMS_canonical_SNV CDS_variant 2 B101,B28
Chr5:55791319 C T EMS_canonical_SNV CDS_variant 2 B15,D11
Chr5:55791465 G A EMS_canonical_SNV CDS_variant 2 B109,B94
Chr5:55791552 G A EMS_canonical_SNV CDS_variant 1 C22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057810894.1
311 aa
N
1
156
311
Sm_multidrug_ex
C
PF06695 Sm_multidrug_ex 148-269 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810894.1 Pfam PF06695 Sm_multidrug_ex Family 148 269 5.9e-38 130.9 Putative small multi-drug export protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057954911.1
AAAAGAGAGGTTGAATTCTATCCAAACTGCACTTTCACACTACTTCTCTATCGTAAAACCCTCATATTCTCCATCAATGGCTGCCATTTTATCTTGCTCTTCCACCATTTCGCCCCTGCCTCAATCCACCTCCAATCCCAAGCTCCCACCTCCAAGAACCCATCTCTCTCCACTCCAAAACCCACAAATTCTCCCAAAGTCGAAATCTTTCCATCCGGGCCGTCGTGAAATCTCCGCGACGCGAGCAAAATCCCACGATT...

CDS

1 records

下载 CDS FASTA
LOC131025242
ATGGCTGCCATTTTATCTTGCTCTTCCACCATTTCGCCCCTGCCTCAATCCACCTCCAATCCCAAGCTCCCACCTCCAAGAACCCATCTCTCTCCACTCCAAAACCCACAAATTCTCCCAAAGTCGAAATCTTTCCATCCGGGCCGTCGTGAAATCTCCGCGACGCGAGCAAAATCCCACGATTTCCTCGAAGAGATCGAAAAGGAGGAATCTTTACTGAACCCCGACGCGAAACCGGTGAAATTCCTATTCTGGGTGTT...

Protein

1 records

下载 Protein FASTA
XP_057810894.1
MAAILSCSSTISPLPQSTSNPKLPPPRTHLSPLQNPQILPKSKSFHPGRREISATRAKSHDFLEEIEKEESLLNPDAKPVKFLFWVLLWASVSVGLYAFSGDARAAAAVAADSIRASGFGVRVANALRASGWPDEAVVFALATLPVIELRGAIPVGYWLHMKPVMLTVLSVLGNMVPVPFIVLYLKSFATSLAGKDGSTASQFLDMLFTRAKEKAGPVEEFQWLGLMLFVAVPFPGTGAWTGAIIASVLDMPFWPAVTAN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器