当前解析结果
SmilChr05G004195| 统一新 Gene ID | SmilChr05G004195 |
|---|---|
| 名称 | SmilChr05G004195 |
| 描述 | glycerol-3-phosphate acyltransferase RAM2-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 55827614 - 55830005 / + |
| NCBI Gene ID | LOC131026154 |
|---|---|
| GeneID | 131026154 |
| locus_tag | - |
| NCBI Name | LOC131026154 |
| 原始查询 | SmilChr05G004195 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycerol-3-phosphate acyltransferase RAM2-like |
| 产物 | glycerol-3-phosphate acyltransferase RAM2-like |
| Arabidopsis | AT2G38110 (GPAT6)glycerol-3-phosphate acyltransferase 6 [Source:NCBI gene (formerly Entrezgene);Acc:818389] identity=55.2; qcov=0.928; evalue=0; confidence=high |
| Rice | Os03g0735900 (GPAT)- identity=76.7; qcov=0.886; evalue=0; confidence=high |
| GO | GO:0010143 (cutin biosynthetic process); GO:0016020 (membrane); GO:0016791 (phosphatase activity); GO:0090447 (glycerol-3-phosphate 2-O-acyltransferase activity) |
| KEGG | - |
| Pfam | PF01553 (Acyltransferase); PF12710 (HAD); PF23270 (HAD_RAM2_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131026154 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057811905.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057811905.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057811905.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057811905.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057811905.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:55827618 |
A |
AT |
1bp_insertion | frameshift_variant | 4 | B136,B8,C19,D6 |
Chr5:55827618 |
A |
AT |
1bp_insertion | CDS_variant | 4 | B136,B8,C19,D6 |
Chr5:55827638 |
AT |
* |
1bp_deletion | CDS_variant | 3 | B107,B32,C53 |
Chr5:55827668 |
A |
AC |
1bp_insertion | frameshift_variant | 7 | A16,A8,B41,B63,B67,B70,C27 |
Chr5:55827689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B107,B32,B54,C53 |
Chr5:55827692 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | B87 |
Chr5:55827692 |
G |
GC |
1bp_insertion | CDS_variant | 1 | B87 |
Chr5:55827694 |
G |
GCA |
2bp_insertion | frameshift_variant | 1 | B87 |
Chr5:55827694 |
G |
GCA |
2bp_insertion | CDS_variant | 1 | B87 |
Chr5:55827721 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr5:55827790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,B4 |
Chr5:55827811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811905.1PF23270
HAD_RAM2_N 44-232 aa
PF12710
HAD 45-223 aa
PF01553
Acyltransferase 316-422 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811905.1 |
Pfam | PF23270 |
HAD_RAM2_N | Domain | 44 | 232 | 1.4e-62 | 211.5 | Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain |
XP_057811905.1 |
Pfam | PF12710 |
HAD | Family | 45 | 223 | 1.8e-24 | 87.9 | haloacid dehalogenase-like hydrolase |
XP_057811905.1 |
Pfam | PF01553 |
Acyltransferase | Family | 316 | 422 | 4.2e-07 | 30.6 | Acyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。