当前解析结果
SmilChr05G004204| 统一新 Gene ID | SmilChr05G004204 |
|---|---|
| 名称 | SmilChr05G004204 |
| 描述 | glycosyltransferase family 92 protein RCOM_0530710-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 55908894 - 55911095 / - |
| NCBI Gene ID | LOC131025256 |
|---|---|
| GeneID | 131025256 |
| locus_tag | - |
| NCBI Name | LOC131025256 |
| 原始查询 | SmilChr05G004204 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycosyltransferase family 92 protein RCOM_0530710-like |
| 产物 | glycosyltransferase family 92 protein RCOM_0530710-like |
| Arabidopsis | AT1G27200 (AT1G27200)glycosyltransferase family protein (DUF23) [Source:NCBI gene (formerly Entrezgene);Acc:839609] identity=54.6; qcov=0.924; evalue=0; confidence=high |
| Rice | Os08g0121900- identity=43.3; qcov=0.929; evalue=6.25e-151; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF01697 (Glyco_transf_92) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025256 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057810909.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057810909.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057810909.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810909.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810909.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:55909103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr5:55909118 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr5:55909208 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr5:55909325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B32,C53,D10 |
Chr5:55909448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C62,C73,C8 |
Chr5:55909472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr5:55909487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr5:55909678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C76 |
Chr5:55909679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C25 |
Chr5:55909855 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B119,B18,B54,B65,C82 |
Chr5:55909982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B64,C48 |
Chr5:55909997 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C62,C73,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810909.1PF01697
Glyco_transf_92 311-548 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810909.1 |
Pfam | PF01697 |
Glyco_transf_92 | Domain | 311 | 548 | 2.1e-37 | 129.8 | Glycosyltransferase family 92 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。