Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004205`

染色体: Chr05 坐标: 55948798-55956504 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004205`
名称	SmilChr05G004205
描述	paired amphipathic helix protein Sin3-like 3
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	55948798 - 55956504 / `+`

ID 对照

NCBI Gene ID	`LOC131025257`
GeneID	`131025257`
locus_tag	`-`
NCBI Name	`LOC131025257`
原始查询	`SmilChr05G004205`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	paired amphipathic helix protein Sin3-like 3
产物	paired amphipathic helix protein Sin3-like 3
Arabidopsis	`AT1G24190` (SNL3) SIN3-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:839032] identity=46.9; qcov=1.04; evalue=0; confidence=high
Rice	`Os01g0109700` - identity=48; qcov=0.986; evalue=0; confidence=high
GO	GO:0000118 (histone deacetylase complex); GO:0000122 (negative regulation of transcription by RNA polymerase II); GO:0000785 (chromatin); GO:0003714 (transcription corepressor activity); GO:0016575 (GO:0016575)
KEGG	-
Pfam	PF02671 (PAH); PF08295 (Sin3_corepress); PF16879 (Sin3a_C)
InterPro	-
eggNOG	-
NR	GeneID:131025257

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810911.1`
2	Chromosome	染色体	0.00000	`XP_057810911.1`
3	Centromere	着丝粒	0.00000	`XP_057810911.1`
4	Chromatin	染色质	0.00000	`XP_057810911.1`
5	Telomere	端粒	0.00000	`XP_057810911.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:55949928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B81
`Chr5:55949940`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr5:55950395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr5:55950396`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B67,B95
`Chr5:55950697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C44,C51
`Chr5:55950931`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,C24,C46,D11,D8
`Chr5:55951443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:55951809`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A19,B71,B88,C5,C62
`Chr5:55952162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C48,D5
`Chr5:55952426`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:55952853`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B120,C41
`Chr5:55952867`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810911.1

1327 aa

664

1327

PAH

Sin3_corepress

Sin3a_C

PF02671 PAH 64-106 aa PF02671 PAH 148-192 aa PF02671 PAH 302-345 aa PF08295 Sin3_corepress 427-519 aa PF16879 Sin3a_C 1042-1290 aa

XP_057810912.1

1327 aa

664

1327

PAH

Sin3_corepress

Sin3a_C

PF02671 PAH 64-106 aa PF02671 PAH 148-192 aa PF02671 PAH 302-345 aa PF08295 Sin3_corepress 427-519 aa PF16879 Sin3a_C 1042-1290 aa

XP_057810913.1

1326 aa

663

1326

PAH

Sin3_corepress

Sin3a_C

PF02671 PAH 64-106 aa PF02671 PAH 148-192 aa PF02671 PAH 301-344 aa PF08295 Sin3_corepress 426-518 aa PF16879 Sin3a_C 1041-1289 aa

XP_057810914.1

1325 aa

662

1325

PAH

Sin3_corepress

Sin3a_C

PF02671 PAH 64-106 aa PF02671 PAH 148-192 aa PF02671 PAH 300-343 aa PF08295 Sin3_corepress 425-517 aa PF16879 Sin3a_C 1040-1288 aa

XP_057810915.1

1324 aa

662

1324

PAH

Sin3_corepress

Sin3a_C

PF02671 PAH 64-106 aa PF02671 PAH 148-192 aa PF02671 PAH 299-342 aa PF08295 Sin3_corepress 424-516 aa PF16879 Sin3a_C 1039-1287 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810911.1`	Pfam	`PF02671`	PAH	Repeat	64	106	9e-40	134.9	Paired amphipathic helix repeat
`XP_057810911.1`	Pfam	`PF02671`	PAH	Repeat	148	192	9e-40	134.9	Paired amphipathic helix repeat
`XP_057810911.1`	Pfam	`PF02671`	PAH	Repeat	302	345	9e-40	134.9	Paired amphipathic helix repeat
`XP_057810911.1`	Pfam	`PF08295`	Sin3_corepress	Domain	427	519	2.3e-34	118.1	Sin3 family co-repressor
`XP_057810911.1`	Pfam	`PF16879`	Sin3a_C	Family	1042	1290	1.5e-45	156.7	C-terminal domain of Sin3a protein
`XP_057810912.1`	Pfam	`PF02671`	PAH	Repeat	64	106	9e-40	134.9	Paired amphipathic helix repeat
`XP_057810912.1`	Pfam	`PF02671`	PAH	Repeat	148	192	9e-40	134.9	Paired amphipathic helix repeat
`XP_057810912.1`	Pfam	`PF02671`	PAH	Repeat	302	345	9e-40	134.9	Paired amphipathic helix repeat
`XP_057810912.1`	Pfam	`PF08295`	Sin3_corepress	Domain	427	519	2.3e-34	118.1	Sin3 family co-repressor
`XP_057810912.1`	Pfam	`PF16879`	Sin3a_C	Family	1042	1290	1.5e-45	156.7	C-terminal domain of Sin3a protein
`XP_057810913.1`	Pfam	`PF02671`	PAH	Repeat	64	106	8.9e-40	134.9	Paired amphipathic helix repeat
`XP_057810913.1`	Pfam	`PF02671`	PAH	Repeat	148	192	8.9e-40	134.9	Paired amphipathic helix repeat
`XP_057810913.1`	Pfam	`PF02671`	PAH	Repeat	301	344	8.9e-40	134.9	Paired amphipathic helix repeat
`XP_057810913.1`	Pfam	`PF08295`	Sin3_corepress	Domain	426	518	2.3e-34	118.1	Sin3 family co-repressor
`XP_057810913.1`	Pfam	`PF16879`	Sin3a_C	Family	1041	1289	1.5e-45	156.7	C-terminal domain of Sin3a protein
`XP_057810914.1`	Pfam	`PF02671`	PAH	Repeat	64	106	8.9e-40	134.9	Paired amphipathic helix repeat
`XP_057810914.1`	Pfam	`PF02671`	PAH	Repeat	148	192	8.9e-40	134.9	Paired amphipathic helix repeat
`XP_057810914.1`	Pfam	`PF02671`	PAH	Repeat	300	343	8.9e-40	134.9	Paired amphipathic helix repeat
`XP_057810914.1`	Pfam	`PF08295`	Sin3_corepress	Domain	425	517	2.3e-34	118.1	Sin3 family co-repressor
`XP_057810914.1`	Pfam	`PF16879`	Sin3a_C	Family	1040	1288	1.4e-45	156.7	C-terminal domain of Sin3a protein
`XP_057810915.1`	Pfam	`PF02671`	PAH	Repeat	64	106	8.9e-40	134.9	Paired amphipathic helix repeat
`XP_057810915.1`	Pfam	`PF02671`	PAH	Repeat	148	192	8.9e-40	134.9	Paired amphipathic helix repeat
`XP_057810915.1`	Pfam	`PF02671`	PAH	Repeat	299	342	8.9e-40	134.9	Paired amphipathic helix repeat
`XP_057810915.1`	Pfam	`PF08295`	Sin3_corepress	Domain	424	516	2.3e-34	118.1	Sin3 family co-repressor
`XP_057810915.1`	Pfam	`PF16879`	Sin3a_C	Family	1039	1287	1.4e-45	156.7	C-terminal domain of Sin3a protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057954928.1
TACGTCTAAACTATGCGTATACACACACATATACATACACACACGCACACCATTGCTGCTACAATGAACTGTTTTGTGCTCGCTCATTTGAAGATCCATTGCTGCAAAAAGCTCCGAGCTTTCTAATGCCTATTTTCCGGATTATGCTTTTCGTATAATTCAAGTTATTTCAAAATTGTGTTCACGATTTATTCTCCTCCTTCGATGAGAGGCGATCTTCCCCGAGGCCTCTTGGATCAGGATTTTTTCTAGTTCGAAGT...

XM_057954931.1
TACGTCTAAACTATGCGTATACACACACATATACATACACACACGCACACCATTGCTGCTACAATGAACTGTTTTGTGCTCGCTCATTTGAAGATCCATTGCTGCAAAAAGCTCCGAGCTTTCTAATGCCTATTTTCCGGATTATGCTTTTCGTATAATTCAAGTTATTTCAAAATTGTGTTCACGATTTATTCTCCTCCTTCGATGAGAGGCGATCTTCCCCGAGGCCTCTTGGATCAGGATTTTTTCTAGTTCGAAGT...

CDS

5 records

下载 CDS FASTA

LOC131025257
ATGAAGAGGTCTAGAGATGATGTGTTTGTGAGTTCTATGCTCAAGGGCTCTGCCATTCCTTCTCCAACTGAACCTTCTGGGCAAGCTCAGATGTCAACTGCAAGGAGTGCGCAGAAGCTCCAGACAACTGATGCCTTGTCGTATCTTAAAGTTGTGAAGGAAAAATTTCAGGACAAAGGGGACAACATGTACAATGAATTTCTTGCTGTCATGAAAGAGTTCAAGGCTCAAAGAATTGATACATCTGGTGTTATAGTGAA...

Protein

5 records

下载 Protein FASTA

XP_057810911.1
MKRSRDDVFVSSMLKGSAIPSPTEPSGQAQMSTARSAQKLQTTDALSYLKVVKEKFQDKGDNMYNEFLAVMKEFKAQRIDTSGVIVKVKELFRGDRDLILGFNAFLPKGYEITLPPEDEPLLKKKPVDFEEAIGFVNKIKTRFQGDHHVYNAFLDILNIYRKNSISITEVYQEVSVLFQDHADLLVEFTHFLPYTTAAPAHHAQPVRNNILLQNSGGSPMTLTRPIEQKPAAGDQFVTCPDPEQLRVNKKENKAERDDDD...

XP_057810912.1
MKRSRDDVFVSSMLKGSAIPSPTEPSGQAQMSTARSAQKLQTTDALSYLKVVKEKFQDKGDNMYNEFLAVMKEFKAQRIDTSGVIVKVKELFRGDRDLILGFNAFLPKGYEITLPPEDEPLLKKKPVDFEEAIGFVNKIKTRFQGDHHVYNAFLDILNIYRKNSISITEVYQEVSVLFQDHADLLVEFTHFLPYTTAAPAHHAQPVRNNILLQNSGGSPMTLTRPIEQKPAAGDQFVTCPDPEQLRVNKKENKAERDDDD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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