Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004218`

染色体: Chr05 坐标: 56052751-56056582 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004218`
名称	SmilChr05G004218
描述	uncharacterized SmilChr05G004218
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56052751 - 56056582 / `-`

ID 对照

NCBI Gene ID	`LOC131025265`
GeneID	`131025265`
locus_tag	`-`
NCBI Name	`LOC131025265`
原始查询	`SmilChr05G004218`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0106900; species=rice; confidence=medium
产物	hit=Os08g0106900; species=rice; confidence=medium
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=33; qcov=0.888; evalue=4.46e-64; confidence=low
Rice	`Os08g0106900` - identity=40.9; qcov=0.849; evalue=2.44e-80; confidence=medium
GO	-
KEGG	-
Pfam	PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:131025265

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810926.1`
2	Chromosome	染色体	0.40000	`XP_057810926.1`
3	Telomere	端粒	0.20000	`XP_057810926.1`
4	Centromere	着丝粒	0.00000	`XP_057810926.1`
5	Chromatin	染色质	0.00000	`XP_057810926.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56052972`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	D11
`Chr5:56052972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr5:56052981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,C25,C63
`Chr5:56053204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B136,C48
`Chr5:56053276`	`CAT`	`C`	2bp_deletion	frameshift_variant	3	A6,B12,C18
`Chr5:56053276`	`CAT`	`C`	2bp_deletion	CDS_variant	3	A6,B12,C18
`Chr5:56053493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,C73
`Chr5:56053655`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,B80
`Chr5:56053865`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B43,B47
`Chr5:56053872`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B51,B65,C29
`Chr5:56053900`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B51,B65,C29
`Chr5:56053902`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B51,B65,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810926.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 70-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 194-341 aa PF04827 Plant_tran 197-345 aa

XP_057810927.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 70-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 194-341 aa PF04827 Plant_tran 197-345 aa

XP_057810928.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 70-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 194-341 aa PF04827 Plant_tran 197-345 aa

XP_057810929.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 70-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 194-341 aa PF04827 Plant_tran 197-345 aa

XP_057810930.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 70-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 194-341 aa PF04827 Plant_tran 197-345 aa

XP_057810931.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 70-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 194-341 aa PF04827 Plant_tran 197-345 aa

XP_057810932.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 70-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 194-341 aa PF04827 Plant_tran 197-345 aa

XP_057810933.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 70-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 194-341 aa PF04827 Plant_tran 197-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810926.1`	Pfam	`PF26138`	DUF8040	Domain	70	150	4.8e-22	78.3	Domain of unknown function (DUF8040)
`XP_057810926.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	5.5e-19	69.0	DDE superfamily endonuclease
`XP_057810926.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	194	341	1.6e-07	32.0	Transposase DDE domain
`XP_057810926.1`	Pfam	`PF04827`	Plant_tran	Family	197	345	3.6e-06	27.4	Plant transposon protein
`XP_057810927.1`	Pfam	`PF26138`	DUF8040	Domain	70	150	4.8e-22	78.3	Domain of unknown function (DUF8040)
`XP_057810927.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	5.5e-19	69.0	DDE superfamily endonuclease
`XP_057810927.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	194	341	1.6e-07	32.0	Transposase DDE domain
`XP_057810927.1`	Pfam	`PF04827`	Plant_tran	Family	197	345	3.6e-06	27.4	Plant transposon protein
`XP_057810928.1`	Pfam	`PF26138`	DUF8040	Domain	70	150	4.8e-22	78.3	Domain of unknown function (DUF8040)
`XP_057810928.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	5.5e-19	69.0	DDE superfamily endonuclease
`XP_057810928.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	194	341	1.6e-07	32.0	Transposase DDE domain
`XP_057810928.1`	Pfam	`PF04827`	Plant_tran	Family	197	345	3.6e-06	27.4	Plant transposon protein
`XP_057810929.1`	Pfam	`PF26138`	DUF8040	Domain	70	150	4.8e-22	78.3	Domain of unknown function (DUF8040)
`XP_057810929.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	5.5e-19	69.0	DDE superfamily endonuclease
`XP_057810929.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	194	341	1.6e-07	32.0	Transposase DDE domain
`XP_057810929.1`	Pfam	`PF04827`	Plant_tran	Family	197	345	3.6e-06	27.4	Plant transposon protein
`XP_057810930.1`	Pfam	`PF26138`	DUF8040	Domain	70	150	4.8e-22	78.3	Domain of unknown function (DUF8040)
`XP_057810930.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	5.5e-19	69.0	DDE superfamily endonuclease
`XP_057810930.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	194	341	1.6e-07	32.0	Transposase DDE domain
`XP_057810930.1`	Pfam	`PF04827`	Plant_tran	Family	197	345	3.6e-06	27.4	Plant transposon protein
`XP_057810931.1`	Pfam	`PF26138`	DUF8040	Domain	70	150	4.8e-22	78.3	Domain of unknown function (DUF8040)
`XP_057810931.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	5.5e-19	69.0	DDE superfamily endonuclease
`XP_057810931.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	194	341	1.6e-07	32.0	Transposase DDE domain
`XP_057810931.1`	Pfam	`PF04827`	Plant_tran	Family	197	345	3.6e-06	27.4	Plant transposon protein
`XP_057810932.1`	Pfam	`PF26138`	DUF8040	Domain	70	150	4.8e-22	78.3	Domain of unknown function (DUF8040)
`XP_057810932.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	5.5e-19	69.0	DDE superfamily endonuclease
`XP_057810932.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	194	341	1.6e-07	32.0	Transposase DDE domain
`XP_057810932.1`	Pfam	`PF04827`	Plant_tran	Family	197	345	3.6e-06	27.4	Plant transposon protein
`XP_057810933.1`	Pfam	`PF26138`	DUF8040	Domain	70	150	4.8e-22	78.3	Domain of unknown function (DUF8040)
`XP_057810933.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	5.5e-19	69.0	DDE superfamily endonuclease
`XP_057810933.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	194	341	1.6e-07	32.0	Transposase DDE domain
`XP_057810933.1`	Pfam	`PF04827`	Plant_tran	Family	197	345	3.6e-06	27.4	Plant transposon protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057954949.1
TGGAAGGTTAAAAGCGAAAACCTCTTGAATCTGTACAAGGAGGCAAAGGAATTGGTGGATAGATTCCGTTCGTTCCAAATTGTGCATGTCCTCAGGGACTTGAATTCCGAGGCTGATGCTCAGGCTAACATAGGCGCGCAACTTGCCGAAGGAGAAGTTCAGGAGGATTTCGACTAGTAGTTGGGCGCGGTAGATTCTCAGGCCGATGAAGTTTTAGTCGAGAACCGATTCAACCCTCCTGTCCTAGTGTTCTTCCCTAA...

XM_057954948.1
TGGAAGGTTAAAAGCGAAAACCTCTTGAATCTGTACAAGGAGGCAAAGGAATTGGTGGATAGATTCCGTTCGTTCCAAATTGTGCATGTCCTCAGGGACTTGAATTCCGAGGCTGATGCTCAGGCTAACATAGGCGCGCAACTTGCCGAAGGAGAAGTTCAGGAGGATTTCGACTAGTAGTTGGGCGCGGTAGATTCTCAGGCCGATGAAGTTTTAGTCGAGAACCGATTCAACCCTCCTGTCCTAGTGTTCTTCCCTAA...

CDS

8 records

下载 CDS FASTA

LOC131025265
ATGCCGACTAACGACGTTACCACAGTATGCATTTACTTGTTGATGGAAGAAATTTTCCATCAACACTTAATTCTTATGGTTGTTGCTTATCGTGTCATGCTTAAGATGAGATCCCGTAAACGAAAAAGAGCTTCTAATGCAACAACTTTTAGGATGATAGAACGTATTCCCGATCAGAATACTCACATGAATAGGCTTGTTGGTGTTAGTGATTTTGATTGCCTAGCAAACTTGCGAATGGATCGCAATACATTTGGTAG...

Protein

8 records

下载 Protein FASTA

XP_057810926.1
MPTNDVTTVCIYLLMEEIFHQHLILMVVAYRVMLKMRSRKRKRASNATTFRMIERIPDQNTHMNRLVGVSDFDCLANLRMDRNTFGRLCILLRDMGGLTNGRYIEVEEQVAMFLSVLAHHKKNRVVKFDFWRSGQTVSKFVHLVLKAILKLHTILLVKPAPVPDDSTNNTWCWFKGCLGALDGSYINLMVSNVDKPKYRTRKGQIATNTLAVCDRNMQFVYVLPGWEGSAADLRILRDALQRANGFRVPKGNYYLCDNGY...

XP_057810927.1
MPTNDVTTVCIYLLMEEIFHQHLILMVVAYRVMLKMRSRKRKRASNATTFRMIERIPDQNTHMNRLVGVSDFDCLANLRMDRNTFGRLCILLRDMGGLTNGRYIEVEEQVAMFLSVLAHHKKNRVVKFDFWRSGQTVSKFVHLVLKAILKLHTILLVKPAPVPDDSTNNTWCWFKGCLGALDGSYINLMVSNVDKPKYRTRKGQIATNTLAVCDRNMQFVYVLPGWEGSAADLRILRDALQRANGFRVPKGNYYLCDNGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器