当前解析结果
SmilChr05G004220| 统一新 Gene ID | SmilChr05G004220 |
|---|---|
| 名称 | SmilChr05G004220 |
| 描述 | uncharacterized SmilChr05G004220 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 56056979 - 56058638 / - |
| NCBI Gene ID | LOC131025267 |
|---|---|
| GeneID | 131025267 |
| locus_tag | - |
| NCBI Name | LOC131025267 |
| 原始查询 | SmilChr05G004220 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:839020]; symbol=AT1G24090; hit=AT1G24090; species=arabidopsis; confidence=medium |
| 产物 | RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:839020]; symbol=AT1G24090; hit=AT1G24090; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G24090 (AT1G24090)RNase H family protein [Source:NCBI gene (formerly Entrezgene);Acc:839020] identity=62.4; qcov=0.484; evalue=8.99e-33; confidence=medium |
| Rice | Os08g0177800- identity=63; qcov=0.422; evalue=1.8e-30; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025267 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057810942.1 |
| 2 | Mitochondrion | 线粒体 | 0.40000 | XP_057810942.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057810942.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810942.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810942.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:56057116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr5:56057223 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,D4 |
Chr5:56057251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,B93 |
Chr5:56057504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr5:56057548 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B23,C13,C60 |
Chr5:56057548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,C13,C60 |
Chr5:56057934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr5:56058007 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B52 |
Chr5:56058007 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B52 |
Chr5:56058014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr5:56058023 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B44 |
Chr5:56058121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B93,C9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。