Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004236`

染色体: Chr05 坐标: 56172160-56179377 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004236`
名称	SmilChr05G004236
描述	uncharacterized SmilChr05G004236
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56172160 - 56179377 / `+`

ID 对照

NCBI Gene ID	`LOC131025282`
GeneID	`131025282`
locus_tag	`-`
NCBI Name	`LOC131025282`
原始查询	`SmilChr05G004236`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0142900; species=rice; confidence=weak
产物	hit=Os12g0142900; species=rice; confidence=weak
Arabidopsis	`ATMG00860` - identity=34.1; qcov=0.059; evalue=1.51e-16; confidence=weak
Rice	`Os12g0142900` - identity=31.7; qcov=0.187; evalue=1.12e-64; confidence=weak
GO	GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration)
KEGG	-
Pfam	PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF03732 (PEG10_N-capsid); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803)
InterPro	-
eggNOG	-
NR	GeneID:131025282

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057810971.1`
2	Cytosol	细胞质基质	0.80000	`XP_057810971.1`
3	Nucleus	细胞核	0.20000	`XP_057810971.1`
4	Chromosome	染色体	0.00000	`XP_057810971.1`
5	Centromere	着丝粒	0.00000	`XP_057810971.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56172783`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,C64,C66
`Chr5:56172803`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B114,B82,C52,C59
`Chr5:56172809`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B132,B26
`Chr5:56172813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr5:56172834`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B19,B50,B87,C55,C74
`Chr5:56172839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B137,B31,B80,C22
`Chr5:56172872`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B40
`Chr5:56172872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr5:56172939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B68,C41,D1
`Chr5:56172978`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr5:56173095`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B57
`Chr5:56174293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810971.1

2118 aa

1059

2118

PEG10_N-capsid

RVT_1

RT_RNaseH_2

RT_RNaseH

RNase_H

RVT_3

Integrase_H2C2

rve

DUF8803

PF03732 PEG10_N-capsid 207-276 aa PF00078 RVT_1 1135-1295 aa PF17919 RT_RNaseH_2 1358-1455 aa PF17917 RT_RNaseH 1384-1487 aa PF00075 RNase_H 1537-1658 aa PF13456 RVT_3 1539-1658 aa PF17921 Integrase_H2C2 1758-1811 aa PF00665 rve 1831-1926 aa PF31073 DUF8803 2053-2117 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810971.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	207	276	1.4e-09	38.9	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain
`XP_057810971.1`	Pfam	`PF00078`	RVT_1	Domain	1135	1295	6.9e-35	121.5	Reverse transcriptase (RNA-dependent DNA polymerase)
`XP_057810971.1`	Pfam	`PF17919`	RT_RNaseH_2	Domain	1358	1455	2.8e-23	82.6	RNase H-like domain found in reverse transcriptase
`XP_057810971.1`	Pfam	`PF17917`	RT_RNaseH	Domain	1384	1487	2e-23	83.2	RNase H-like domain found in reverse transcriptase
`XP_057810971.1`	Pfam	`PF00075`	RNase_H	Domain	1537	1658	3.8e-09	37.6	RNase H
`XP_057810971.1`	Pfam	`PF13456`	RVT_3	Domain	1539	1658	3.6e-20	72.8	Reverse transcriptase-like
`XP_057810971.1`	Pfam	`PF17921`	Integrase_H2C2	Domain	1758	1811	3.1e-08	34.4	Integrase zinc binding domain
`XP_057810971.1`	Pfam	`PF00665`	rve	Domain	1831	1926	2.8e-12	47.5	Integrase core domain
`XP_057810971.1`	Pfam	`PF31073`	DUF8803	Domain	2053	2117	2.7e-12	47.1	Domain of unknown function (DUF8803)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954988.1
TTCTATCAAGTCTTCGAGTATTCATCAAGTATCCTTCAAATCTTCAAGATCTTCAAGGCAACATTCAAGTATCCTTCGAATCTTCAAGTATTTGAGAATTCAAATCTTCAAGTATCATTCGAATCTTCAAGTATTTGAGAATTCAAATCTTCAAGTATCATTCGAATCTTCAAGTATTTGAGCGTTCAAATCTTCAAGTATCCTTCAAACTCTTCAAGTATTCCTGCAAATCTCTGAAGTGATCTTCAAGTATCCAAAGA...

CDS

1 records

下载 CDS FASTA

LOC131025282
ATGTCCATTCAACCAAATGCAACTGCTCCAGCTTCATCTAAAGGTTCTTCGGAAAGCATCGGTGTGATCACGCGAAGCAAAGCAAAATTGATGCAAGAGGTGTCCAAGACGACCTCCCGTCTTCCATCTATCCATGAAGAAGATGACAACTTTGAGAGAAGCTTCACATTCCCCACTGAAAATTATCAACTCCATGCAAGTGTCATGATGACAAACACTTCCACCATGGAGGAACAACTCTTGAACTTGACAAAGATGGT...

Protein

1 records

下载 Protein FASTA

XP_057810971.1
MSIQPNATAPASSKGSSESIGVITRSKAKLMQEVSKTTSRLPSIHEEDDNFERSFTFPTENYQLHASVMMTNTSTMEEQLLNLTKMVESLTKHIQEQDAQIAKLKGEKGDSSHANNDREGEESEEDGENNDEEISKDKSKSDGKKPSGKDILFSSGGLIPIDQLKEFIEATMKNNSDGSSKSSLTYSKPYTRRIDSMRMPLGYQPPKFQQFDGKGNPRQHVAHFIETCNNAGTYGDHLVKQFVRSLKGNAFDWYTDLESN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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