当前解析结果
SmilChr05G004244| 统一新 Gene ID | SmilChr05G004244 |
|---|---|
| 名称 | SmilChr05G004244 |
| 描述 | probable nucleoredoxin 1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 56247092 - 56250884 / - |
| NCBI Gene ID | LOC131025289 |
|---|---|
| GeneID | 131025289 |
| locus_tag | - |
| NCBI Name | LOC131025289 |
| 原始查询 | SmilChr05G004244 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable nucleoredoxin 1 |
| 产物 | probable nucleoredoxin 1 |
| Arabidopsis | AT1G60420 (AT1G60420)DC1 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:842337] identity=60.7; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0405900- identity=55.5; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004791 (thioredoxin-disulfide reductase (NADPH) activity) |
| KEGG | - |
| Pfam | PF00085 (Thioredoxin); PF00578 (AhpC-TSA); PF03107 (C1_2); PF08534 (Redoxin); PF13098 (Thioredoxin_2); PF13905 (Thioredoxin_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025289 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057810980.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057810980.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057810980.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810980.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810980.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:56247457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B94 |
Chr5:56247595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,C37 |
Chr5:56247628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr5:56247646 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B111,B129,C56 |
Chr5:56247647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,D6 |
Chr5:56247664 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr5:56247691 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,D10 |
Chr5:56247739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr5:56247742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B129,C56 |
Chr5:56247745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B47,D11 |
Chr5:56247748 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B47 |
Chr5:56247748 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810980.1PF08534
Redoxin 30-147 aa
PF00578
AhpC-TSA 33-138 aa
PF13098
Thioredoxin_2 44-150 aa
PF13905
Thioredoxin_8 45-138 aa
PF00085
Thioredoxin 46-89 aa
PF13905
Thioredoxin_8 205-297 aa
PF08534
Redoxin 350-459 aa
PF00578
AhpC-TSA 352-456 aa
PF13905
Thioredoxin_8 365-457 aa
PF13098
Thioredoxin_2 365-459 aa
PF00085
Thioredoxin 366-412 aa
PF03107
C1_2 504-545 aa
XP_057810981.1PF13905
Thioredoxin_8 105-197 aa
PF08534
Redoxin 250-359 aa
PF00578
AhpC-TSA 252-356 aa
PF13905
Thioredoxin_8 265-357 aa
PF13098
Thioredoxin_2 265-359 aa
PF00085
Thioredoxin 266-312 aa
PF03107
C1_2 404-445 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810980.1 |
Pfam | PF08534 |
Redoxin | Domain | 30 | 147 | 5.3e-21 | 75.7 | Redoxin |
XP_057810980.1 |
Pfam | PF00578 |
AhpC-TSA | Domain | 33 | 138 | 1.6e-26 | 93.4 | AhpC/TSA family |
XP_057810980.1 |
Pfam | PF13098 |
Thioredoxin_2 | Domain | 44 | 150 | 1.2e-19 | 71.4 | Thioredoxin-like domain |
XP_057810980.1 |
Pfam | PF13905 |
Thioredoxin_8 | Domain | 45 | 138 | 7.1e-78 | 257.8 | Thioredoxin-like |
XP_057810980.1 |
Pfam | PF00085 |
Thioredoxin | Domain | 46 | 89 | 6.2e-17 | 62.2 | Thioredoxin |
XP_057810980.1 |
Pfam | PF13905 |
Thioredoxin_8 | Domain | 205 | 297 | 7.1e-78 | 257.8 | Thioredoxin-like |
XP_057810980.1 |
Pfam | PF08534 |
Redoxin | Domain | 350 | 459 | 5.3e-21 | 75.7 | Redoxin |
XP_057810980.1 |
Pfam | PF00578 |
AhpC-TSA | Domain | 352 | 456 | 1.6e-26 | 93.4 | AhpC/TSA family |
XP_057810980.1 |
Pfam | PF13905 |
Thioredoxin_8 | Domain | 365 | 457 | 7.1e-78 | 257.8 | Thioredoxin-like |
XP_057810980.1 |
Pfam | PF13098 |
Thioredoxin_2 | Domain | 365 | 459 | 1.2e-19 | 71.4 | Thioredoxin-like domain |
XP_057810980.1 |
Pfam | PF00085 |
Thioredoxin | Domain | 366 | 412 | 6.2e-17 | 62.2 | Thioredoxin |
XP_057810980.1 |
Pfam | PF03107 |
C1_2 | Domain | 504 | 545 | 1.3e-08 | 35.7 | C1 domain |
XP_057810981.1 |
Pfam | PF13905 |
Thioredoxin_8 | Domain | 105 | 197 | 1.4e-54 | 183.2 | Thioredoxin-like |
XP_057810981.1 |
Pfam | PF08534 |
Redoxin | Domain | 250 | 359 | 1.9e-12 | 47.9 | Redoxin |
XP_057810981.1 |
Pfam | PF00578 |
AhpC-TSA | Domain | 252 | 356 | 2.2e-15 | 57.4 | AhpC/TSA family |
XP_057810981.1 |
Pfam | PF13905 |
Thioredoxin_8 | Domain | 265 | 357 | 1.4e-54 | 183.2 | Thioredoxin-like |
XP_057810981.1 |
Pfam | PF13098 |
Thioredoxin_2 | Domain | 265 | 359 | 2.2e-13 | 51.3 | Thioredoxin-like domain |
XP_057810981.1 |
Pfam | PF00085 |
Thioredoxin | Domain | 266 | 312 | 6.7e-09 | 36.4 | Thioredoxin |
XP_057810981.1 |
Pfam | PF03107 |
C1_2 | Domain | 404 | 445 | 1e-08 | 36.1 | C1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。