Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004247`

染色体: Chr05 坐标: 56272197-56273003 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004247`
名称	SmilChr05G004247
描述	uncharacterized SmilChr05G004247
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56272197 - 56273003 / `+`

ID 对照

NCBI Gene ID	`LOC131026164`
GeneID	`131026164`
locus_tag	`-`
NCBI Name	`LOC131026164`
原始查询	`SmilChr05G004247`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA ligase-like protein, putative (DUF1645) [Source:NCBI gene (formerly Entrezgene);Acc:843378]; symbol=AT1G70420; hit=AT1G70420; species=arabidopsis; confidence=medium
产物	DNA ligase-like protein, putative (DUF1645) [Source:NCBI gene (formerly Entrezgene);Acc:843378]; symbol=AT1G70420; hit=AT1G70420; species=arabidopsis; confidence=medium
Arabidopsis	`AT1G70420` (AT1G70420) DNA ligase-like protein, putative (DUF1645) [Source:NCBI gene (formerly Entrezgene);Acc:843378] identity=39.5; qcov=0.981; evalue=3.5e-53; confidence=medium
Rice	`Os05g0568600` - identity=31.2; qcov=0.896; evalue=4.62e-14; confidence=low
GO	-
KEGG	-
Pfam	PF07816 (DUF1645)
InterPro	-
eggNOG	-
NR	GeneID:131026164

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057811916.1`
2	Cytosol	细胞质基质	0.60000	`XP_057811916.1`
3	Nucleus	细胞核	0.20000	`XP_057811916.1`
4	Chromosome	染色体	0.00000	`XP_057811916.1`
5	Centromere	着丝粒	0.00000	`XP_057811916.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56272203`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B133
`Chr5:56272397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr5:56272420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr5:56272476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B30,B35
`Chr5:56272485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr5:56272544`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B18,B21,C42,C63
`Chr5:56272556`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B45,B82
`Chr5:56272558`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C39
`Chr5:56272558`	`CG`	`C`	1bp_deletion	CDS_variant	1	C39
`Chr5:56272742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,C4
`Chr5:56272775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr5:56272842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811916.1

268 aa

134

268

DUF1645

PF07816 DUF1645 69-245 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811916.1`	Pfam	`PF07816`	DUF1645	Family	69	245	2.5e-17	64.8	Protein of unknown function (DUF1645)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057955933.1
ATGAACGATTTCTATTCAGATAAAGAAATCAGCGAAGATTTATACAAACATTTGAAGATTATGGAAAGCGATCAGGATTTGAAGCTGCAGGAATTTCAATTTACAGAGAATAATTCCGACGAAGAAGAAGAAGAAGTCGACGAAGAAGAAGAAGAAGAGTTCTCATTTGTCAGCGTAGGAGAAGACGGCGCGGCGGCGATCGCGGCGGAGGACGCGTTCAGCGGGGGCCGGATCAAGGCGGCGGCCTTCCCATTGTTCGA...

CDS

1 records

下载 CDS FASTA

LOC131026164
ATGAACGATTTCTATTCAGATAAAGAAATCAGCGAAGATTTATACAAACATTTGAAGATTATGGAAAGCGATCAGGATTTGAAGCTGCAGGAATTTCAATTTACAGAGAATAATTCCGACGAAGAAGAAGAAGAAGTCGACGAAGAAGAAGAAGAAGAGTTCTCATTTGTCAGCGTAGGAGAAGACGGCGCGGCGGCGATCGCGGCGGAGGACGCGTTCAGCGGGGGCCGGATCAAGGCGGCGGCCTTCCCATTGTTCGA...

Protein

1 records

下载 Protein FASTA

XP_057811916.1
MNDFYSDKEISEDLYKHLKIMESDQDLKLQEFQFTENNSDEEEEEVDEEEEEEFSFVSVGEDGAAAIAAEDAFSGGRIKAAAFPLFDQSLLFAGDGEPPEDLPMRPPVKKVFVETSGGAPAAADENIAGPYCEWSSRKAVEAAPAAEACKKSNSTGFSKIWRLKEITCRSNSDGRDAFVFLNGGHAPPHAAAEKAAPPPVERTSPPPPAVKGAKKGGKGKAAVSPHEVYLRSKAKEEERRRSYLPYRPELMGFFTNINGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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