Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004255`

染色体: Chr05 坐标: 56331542-56335327 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004255`
名称	SmilChr05G004255
描述	uncharacterized SmilChr05G004255
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56331542 - 56335327 / `-`

ID 对照

NCBI Gene ID	`LOC131025303`
GeneID	`131025303`
locus_tag	`-`
NCBI Name	`LOC131025303`
原始查询	`SmilChr05G004255`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	signal recognition particle binding protein [Source:NCBI gene (formerly Entrezgene);Acc:830451]; symbol=AT5G05670; hit=AT5G05670; species=arabidopsis; confidence=high
产物	signal recognition particle binding protein [Source:NCBI gene (formerly Entrezgene);Acc:830451]; symbol=AT5G05670; hit=AT5G05670; species=arabidopsis; confidence=high
Arabidopsis	`AT5G05670` (AT5G05670) signal recognition particle binding protein [Source:NCBI gene (formerly Entrezgene);Acc:830451] identity=69; qcov=0.989; evalue=2.45e-132; confidence=high
Rice	`Os08g0524000` - identity=65.4; qcov=0.931; evalue=4.85e-113; confidence=high
GO	GO:0005525 (GTP binding); GO:0005785 (signal recognition particle receptor complex); GO:0045047 (protein targeting to ER)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage))
Pfam	PF00009 (GTP_EFTU); PF00025 (Arf); PF04670 (Gtr1_RagA); PF08477 (Roc); PF09439 (SRPRB)
InterPro	-
eggNOG	-
NR	GeneID:131025303

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057810997.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057810997.1`
3	Nucleus	细胞核	0.00000	`XP_057810997.1`
4	Chromosome	染色体	0.00000	`XP_057810997.1`
5	Centromere	着丝粒	0.00000	`XP_057810997.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56331777`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr5:56331799`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr5:56332970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,C40,D9
`Chr5:56334300`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810997.1

261 aa

130

261

Arf

SRPRB

Roc

Gtr1_RagA

GTP_EFTU

PF00025 Arf 51-205 aa PF09439 SRPRB 57-231 aa PF08477 Roc 60-181 aa PF04670 Gtr1_RagA 60-202 aa PF00009 GTP_EFTU 103-246 aa

XP_057810998.1

261 aa

130

261

Arf

SRPRB

Roc

Gtr1_RagA

GTP_EFTU

PF00025 Arf 51-205 aa PF09439 SRPRB 57-231 aa PF08477 Roc 60-181 aa PF04670 Gtr1_RagA 60-202 aa PF00009 GTP_EFTU 103-246 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810997.1`	Pfam	`PF00025`	Arf	Domain	51	205	4.1e-16	59.7	ADP-ribosylation factor family
`XP_057810997.1`	Pfam	`PF09439`	SRPRB	Domain	57	231	7.9e-34	117.3	Signal recognition particle receptor beta subunit
`XP_057810997.1`	Pfam	`PF08477`	Roc	Domain	60	181	8.5e-07	30.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057810997.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	60	202	1.5e-06	28.5	Gtr1/RagA G protein conserved region
`XP_057810997.1`	Pfam	`PF00009`	GTP_EFTU	Domain	103	246	1.5e-06	28.7	Elongation factor Tu GTP binding domain
`XP_057810998.1`	Pfam	`PF00025`	Arf	Domain	51	205	4.1e-16	59.7	ADP-ribosylation factor family
`XP_057810998.1`	Pfam	`PF09439`	SRPRB	Domain	57	231	7.9e-34	117.3	Signal recognition particle receptor beta subunit
`XP_057810998.1`	Pfam	`PF08477`	Roc	Domain	60	181	8.5e-07	30.0	Ras of Complex, Roc, domain of DAPkinase
`XP_057810998.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	60	202	1.5e-06	28.5	Gtr1/RagA G protein conserved region
`XP_057810998.1`	Pfam	`PF00009`	GTP_EFTU	Domain	103	246	1.5e-06	28.7	Elongation factor Tu GTP binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955015.1
TTACGAATTTTCCGGCGATATCCGCCATTTAACGTCGTGCTCCACTGCTCTGTTGCTGCAGCAGCACGCCGCCGACTCTGTTTATCCCCACCGATTTCGCCACTTTGCATTCAATTCAAGAAGCCATGGATGAGCAGAAATTAGAGAATCTGAAGATCCAATTGCAGCAGTTACAAAATGAAGCGCACGAATTTGTGCAGAGTATCCCGCCAATGCAGCTCTATGGTGCCGTCGGAGTAGTCATTTTCACCATACTTTTC...

XM_057955014.1
AACAAATCGAATAGTGAAATACCCGGTTTTTAACGGACCGGGTAAACTCGGATCCGATTTCTATCGCTCCGTGATCCTCTGAATTAGGGTTTCTATTATTTTGGGGAGAAATCAAAACTTTCTTTACTCGCTCCTTCATTTGACAGTAAATTGCTGAAGCCATGGATGAGCAGAAATTAGAGAATCTGAAGATCCAATTGCAGCAGTTACAAAATGAAGCGCACGAATTTGTGCAGAGTATCCCGCCAATGCAGCTCTAT...

CDS

2 records

下载 CDS FASTA

LOC131025303
ATGGATGAGCAGAAATTAGAGAATCTGAAGATCCAATTGCAGCAGTTACAAAATGAAGCGCACGAATTTGTGCAGAGTATCCCGCCAATGCAGCTCTATGGTGCCGTCGGAGTAGTCATTTTCACCATACTTTTCTTCTTAATCATTCGGCTTTTCAAGCGTAGGGCTTCAAATACTATTGTGCTCACTGGGTTAAGTGGAAGTGGCAAAACTGTTCTTTTTTACCAGCTTCGGGATGGCTCCGCCCATCAGGGTACTGT...

Protein

2 records

下载 Protein FASTA

XP_057810997.1
MDEQKLENLKIQLQQLQNEAHEFVQSIPPMQLYGAVGVVIFTILFFLIIRLFKRRASNTIVLTGLSGSGKTVLFYQLRDGSAHQGTVTSMEPNEETFVLHSETTKKGKVKPVHIVDVPGHSRLRPKLDEFLPQAAGIVFVVDAVEFLPNVRAASEYLYDILTKASVVKRKIPLLLLCNKVDKVTAHTKDFIRKQLEKEIDKLRASRTALSSADIANEYSLGVPGEAFAFHQCLNKISVEETSGSTGDISQLEKFIREYVK...

XP_057810998.1
MDEQKLENLKIQLQQLQNEAHEFVQSIPPMQLYGAVGVVIFTILFFLIIRLFKRRASNTIVLTGLSGSGKTVLFYQLRDGSAHQGTVTSMEPNEETFVLHSETTKKGKVKPVHIVDVPGHSRLRPKLDEFLPQAAGIVFVVDAVEFLPNVRAASEYLYDILTKASVVKRKIPLLLLCNKVDKVTAHTKDFIRKQLEKEIDKLRASRTALSSADIANEYSLGVPGEAFAFHQCLNKISVEETSGSTGDISQLEKFIREYVK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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