Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G004258

染色体: Chr05 坐标: 56382501-56386365 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G004258
名称SmilChr05G004258
描述cysteine-rich receptor-like protein kinase 2
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向56382501 - 56386365 / -

ID 对照

NCBI Gene IDLOC131025304
GeneID131025304
locus_tag-
NCBI NameLOC131025304
原始查询SmilChr05G004258

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cysteine-rich receptor-like protein kinase 2
产物cysteine-rich receptor-like protein kinase 2
ArabidopsisAT1G70520 (CRK2)
cysteine-rich RLK (RECEPTOR-like protein kinase) 2 [Source:NCBI gene (formerly Entrezgene);Acc:843389]
identity=64.5; qcov=1.02; evalue=0; confidence=high
RiceOs05g0130100
-
identity=49.6; qcov=0.786; evalue=5.05e-153; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal)
InterPro-
eggNOG-
NRGeneID:131025304

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057811000.1
2 Nucleus 细胞核 0.00000 XP_057811000.1
3 Chromosome 染色体 0.00000 XP_057811000.1
4 Centromere 着丝粒 0.00000 XP_057811000.1
5 Chromatin 染色质 0.00000 XP_057811000.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:56383064 G A EMS_canonical_SNV CDS_variant 1 D10
Chr5:56383250 G A EMS_canonical_SNV CDS_variant 2 B18,C2
Chr5:56383776 C T EMS_canonical_SNV CDS_variant 2 B57,D8
Chr5:56383788 C T EMS_canonical_SNV CDS_variant 2 B48,B77
Chr5:56383872 G A EMS_canonical_SNV CDS_variant 3 A7,B127,B80
Chr5:56383950 G A EMS_canonical_SNV CDS_variant 2 B48,B77
Chr5:56384635 G A EMS_canonical_SNV CDS_variant 2 C2,D11
Chr5:56384683 G A EMS_canonical_SNV CDS_variant 1 B104
Chr5:56384776 C T EMS_canonical_SNV CDS_variant 3 B139,C46,C61
Chr5:56384789 G A EMS_canonical_SNV CDS_variant 1 A18
Chr5:56384811 G A EMS_canonical_SNV CDS_variant 4 B53,C17,C23,C42
Chr5:56384834 GC G 1bp_deletion frameshift_variant 1 B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811000.1
641 aa
N
1
320
641
Stress-antifung
Stress-antifung
Pkinase
PK_Tyr_Ser-Thr
Pkinase_fungal
C
PF01657 Stress-antifung 35-127 aa PF01657 Stress-antifung 142-233 aa PF00069 Pkinase 315-524 aa PF07714 PK_Tyr_Ser-Thr 317-517 aa PF17667 Pkinase_fungal 369-491 aa
XP_057811001.1
641 aa
N
1
320
641
Stress-antifung
Stress-antifung
Pkinase
PK_Tyr_Ser-Thr
Pkinase_fungal
C
PF01657 Stress-antifung 35-127 aa PF01657 Stress-antifung 142-233 aa PF00069 Pkinase 315-524 aa PF07714 PK_Tyr_Ser-Thr 317-517 aa PF17667 Pkinase_fungal 369-491 aa
XP_057811002.1
641 aa
N
1
320
641
Stress-antifung
Stress-antifung
Pkinase
PK_Tyr_Ser-Thr
Pkinase_fungal
C
PF01657 Stress-antifung 35-127 aa PF01657 Stress-antifung 142-233 aa PF00069 Pkinase 315-524 aa PF07714 PK_Tyr_Ser-Thr 317-517 aa PF17667 Pkinase_fungal 369-491 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057811000.1 Pfam PF01657 Stress-antifung Family 35 127 2.9e-28 99.1 Salt stress response/antifungal
XP_057811000.1 Pfam PF01657 Stress-antifung Family 142 233 2.9e-28 99.1 Salt stress response/antifungal
XP_057811000.1 Pfam PF00069 Pkinase Domain 315 524 2.5e-46 158.9 Protein kinase domain
XP_057811000.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 317 517 4.7e-46 157.9 Protein tyrosine and serine/threonine kinase
XP_057811000.1 Pfam PF17667 Pkinase_fungal Domain 369 491 8.1e-06 25.5 Fungal protein kinase
XP_057811001.1 Pfam PF01657 Stress-antifung Family 35 127 2.9e-28 99.1 Salt stress response/antifungal
XP_057811001.1 Pfam PF01657 Stress-antifung Family 142 233 2.9e-28 99.1 Salt stress response/antifungal
XP_057811001.1 Pfam PF00069 Pkinase Domain 315 524 2.5e-46 158.9 Protein kinase domain
XP_057811001.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 317 517 4.7e-46 157.9 Protein tyrosine and serine/threonine kinase
XP_057811001.1 Pfam PF17667 Pkinase_fungal Domain 369 491 8.1e-06 25.5 Fungal protein kinase
XP_057811002.1 Pfam PF01657 Stress-antifung Family 35 127 2.9e-28 99.1 Salt stress response/antifungal
XP_057811002.1 Pfam PF01657 Stress-antifung Family 142 233 2.9e-28 99.1 Salt stress response/antifungal
XP_057811002.1 Pfam PF00069 Pkinase Domain 315 524 2.5e-46 158.9 Protein kinase domain
XP_057811002.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 317 517 4.7e-46 157.9 Protein tyrosine and serine/threonine kinase
XP_057811002.1 Pfam PF17667 Pkinase_fungal Domain 369 491 8.1e-06 25.5 Fungal protein kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057955018.1
GCGTCAAAAACGACGACCCCACTCAACGCGACAGACAGAGGCGCTGAAGTTGAAGAAGCTTCTGCGCATGCTTTTCTTTGTCAATTTTCAAAACTTTGACAAAATCATGGAAAATTCATCCTAATTTCACCCACTTTTTTCTCCATTTTTACTTCTCTCATCCCCAAAATCCAATCGCATCGTTTGATGATAGTATATTAGTATTCAAGCACTCATCAGTCATCTTCTCTGTCTACCTTCTCTCACTTGCAGTAAAAGCC...
XM_057955017.1
TCAACGCGACAGACAGAGGCGCTGAAGTTGAAGAAGCTTCTGCGCATGCTTTTCTTTGTCAATTTTCAAAACTTTGACAAAATCATGGAAAATTCATCCTAATTTCACCCACTTTTTTCTCCATTTTTACTTCTCTCATCCCCAAAATCCAATCGCATCGTTTGATGATAGTATATTAGTATTCAAGCACTCATCAGTCATCTTCTCTGTCTACCTTCTCTCACTTGCAGTAAAAGCCATCGTTATCTCAGAATACTGAA...

CDS

3 records

下载 CDS FASTA
LOC131025304
ATGATGAAGAAGATTGTGATCGTGATCATGATCACAATGGTGATCTTGCTATTACCAGCTGCATTATATGCACAGCCAAGATCTCAGAAAATAAAGCAAATATGTGGAAGCCAACCTGAACACAACGCCACTCTCTTCGTGCCAAACTTTGTGGCCGTTATGGAGAACATAAGCACGCAAATCCGGGCTTCGGGCTTCGGCGTGGCGGAAGCGGGCTCGGGGCCCGACAAGAACTACGGCCTGGCCCAGTGCTACGGCGA...
LOC131025304
ATGATGAAGAAGATTGTGATCGTGATCATGATCACAATGGTGATCTTGCTATTACCAGCTGCATTATATGCACAGCCAAGATCTCAGAAAATAAAGCAAATATGTGGAAGCCAACCTGAACACAACGCCACTCTCTTCGTGCCAAACTTTGTGGCCGTTATGGAGAACATAAGCACGCAAATCCGGGCTTCGGGCTTCGGCGTGGCGGAAGCGGGCTCGGGGCCCGACAAGAACTACGGCCTGGCCCAGTGCTACGGCGA...

Protein

3 records

下载 Protein FASTA
XP_057811000.1
MMKKIVIVIMITMVILLLPAALYAQPRSQKIKQICGSQPEHNATLFVPNFVAVMENISTQIRASGFGVAEAGSGPDKNYGLAQCYGDLSPVDCVLCYAEARTVLPQCYPVNGGRIYLDGCFMRAENYSFYGEHTGPTDQAVCGNRTRPGSAFNESVGRALSQAVSAAPSNNGYARAVVRTSNESAYVLADCWRTISPSACRACLENASAAISGCLPLSEGRALNTGCFMRYSDTNFLNPIPRSGSSRGRVIGLAIAAVSV...
XP_057811001.1
MMKKIVIVIMITMVILLLPAALYAQPRSQKIKQICGSQPEHNATLFVPNFVAVMENISTQIRASGFGVAEAGSGPDKNYGLAQCYGDLSPVDCVLCYAEARTVLPQCYPVNGGRIYLDGCFMRAENYSFYGEHTGPTDQAVCGNRTRPGSAFNESVGRALSQAVSAAPSNNGYARAVVRTSNESAYVLADCWRTISPSACRACLENASAAISGCLPLSEGRALNTGCFMRYSDTNFLNPIPRSGSSRGRVIGLAIAAVSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器