Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004259`

染色体: Chr05 坐标: 56388793-56394880 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004259`
名称	SmilChr05G004259
描述	cysteine-rich receptor-like protein kinase 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56388793 - 56394880 / `-`

ID 对照

NCBI Gene ID	`LOC131025307`
GeneID	`131025307`
locus_tag	`-`
NCBI Name	`LOC131025307`
原始查询	`SmilChr05G004259`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cysteine-rich receptor-like protein kinase 2
产物	cysteine-rich receptor-like protein kinase 2
Arabidopsis	`AT1G70520` (CRK2) cysteine-rich RLK (RECEPTOR-like protein kinase) 2 [Source:NCBI gene (formerly Entrezgene);Acc:843389] identity=59.8; qcov=1; evalue=0; confidence=high
Rice	`Os05g0130100` - identity=47; qcov=0.779; evalue=1.52e-142; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131025307

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057811016.1`
2	Nucleus	细胞核	0.00000	`XP_057811016.1`
3	Chromosome	染色体	0.00000	`XP_057811016.1`
4	Centromere	着丝粒	0.00000	`XP_057811016.1`
5	Chromatin	染色质	0.00000	`XP_057811016.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56388975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B65,D11
`Chr5:56388998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B74,B88,C22,C57
`Chr5:56389023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A25,B100,B30,C47
`Chr5:56389047`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,B133,B91
`Chr5:56389070`	`T`	`TGG`	2bp_insertion	frameshift_variant	7	B134,B4,B55,B67,C26,C28,C59
`Chr5:56389135`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr5:56389141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B134,B55,B67,C59
`Chr5:56389143`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,B134,B55,B67,C59
`Chr5:56389218`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B99,C87
`Chr5:56389218`	`AT`	`A`	1bp_deletion	CDS_variant	2	B99,C87
`Chr5:56389250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr5:56389279`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811016.1

642 aa

321

642

Stress-antifung

Pkinase

PK_Tyr_Ser-Thr

PF01657 Stress-antifung 45-130 aa PF01657 Stress-antifung 145-238 aa PF00069 Pkinase 320-589 aa PF07714 PK_Tyr_Ser-Thr 322-587 aa

XP_057811017.1

642 aa

321

642

Stress-antifung

Pkinase

PK_Tyr_Ser-Thr

PF01657 Stress-antifung 45-130 aa PF01657 Stress-antifung 145-238 aa PF00069 Pkinase 320-589 aa PF07714 PK_Tyr_Ser-Thr 322-587 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811016.1`	Pfam	`PF01657`	Stress-antifung	Family	45	130	4.2e-26	92.2	Salt stress response/antifungal
`XP_057811016.1`	Pfam	`PF01657`	Stress-antifung	Family	145	238	4.2e-26	92.2	Salt stress response/antifungal
`XP_057811016.1`	Pfam	`PF00069`	Pkinase	Domain	320	589	1.6e-46	159.6	Protein kinase domain
`XP_057811016.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	322	587	1.9e-47	162.5	Protein tyrosine and serine/threonine kinase
`XP_057811017.1`	Pfam	`PF01657`	Stress-antifung	Family	45	130	4.2e-26	92.2	Salt stress response/antifungal
`XP_057811017.1`	Pfam	`PF01657`	Stress-antifung	Family	145	238	4.2e-26	92.2	Salt stress response/antifungal
`XP_057811017.1`	Pfam	`PF00069`	Pkinase	Domain	320	589	1.6e-46	159.6	Protein kinase domain
`XP_057811017.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	322	587	1.9e-47	162.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955033.1
TTGGACCACTAATCATACAAAATATCAACATTCTTCTGTCCAACATCACATAATACTATTCAATATTCTCTCACCTTTTATCTCTCTCTCCCCATCTCTACTATCACCAAAAGAAGCTAAATCCCAGCATTTCTCGTGGATAACTAAAAGAAAAATTTAGGAGAGAGAAAGAAATCATGATCAAGAAAGCATCTCCCATTCGCCTTGTAATGATGATCAAGCTCATAATCCTACTTCTTAAAGATGCATCATTTGCCGAT...

XM_057955034.1
ACATAATACTATTCAATATTCTCTCACCTTTTATCTCTCTCTCCCCATCTCTACTATCACCAAAAGAAGCTAAATCCCAGCATTTCTCGTGGATAACTAAAAGGGGTCATATTGTACATTTCACATTCTCCCACTGCAGAAAAATTTAGGAGAGAGAAAGAAATCATGATCAAGAAAGCATCTCCCATTCGCCTTGTAATGATGATCAAGCTCATAATCCTACTTCTTAAAGATGCATCATTTGCCGATCCAAGAGCTCG...

CDS

2 records

下载 CDS FASTA

LOC131025307
ATGATCAAGAAAGCATCTCCCATTCGCCTTGTAATGATGATCAAGCTCATAATCCTACTTCTTAAAGATGCATCATTTGCCGATCCAAGAGCTCGGACAATCAAGCTCATATGTGGGACCCACCTCCAACACGACAGCAACGTTTTTGTCCCAAATTTCTTCGCCACCATGAACAACGTGAGCCTCCAAATAAGCACTTCGGGCTTCGGCGTGGCGGAGACGGGCCGGGGGCCCGACGGGAGCTACGGCTTCGCGCAGTG...

Protein

2 records

下载 Protein FASTA

XP_057811016.1
MIKKASPIRLVMMIKLIILLLKDASFADPRARTIKLICGTHLQHDSNVFVPNFFATMNNVSLQISTSGFGVAETGRGPDGSYGFAQCFRDIPRTECALCYAEARTNVPQCHPANGGRIYLDGCFLRYANYSFFHEYRGPSDRVVCENRTRKDSVFQESVRKAILDAASAAPRNSGFGWARAPAGDQGESAYVLADCWRTLDARACRACLENASVSVSGCLPSSEGRALNTGCFMRYSDTNFLNPMPGNGNHRGRVVAIAA...

XP_057811017.1
MIKKASPIRLVMMIKLIILLLKDASFADPRARTIKLICGTHLQHDSNVFVPNFFATMNNVSLQISTSGFGVAETGRGPDGSYGFAQCFRDIPRTECALCYAEARTNVPQCHPANGGRIYLDGCFLRYANYSFFHEYRGPSDRVVCENRTRKDSVFQESVRKAILDAASAAPRNSGFGWARAPAGDQGESAYVLADCWRTLDARACRACLENASVSVSGCLPSSEGRALNTGCFMRYSDTNFLNPMPGNGNHRGRVVAIAA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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