Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G004274

染色体: Chr05 坐标: 56547995-56551574 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G004274
名称SmilChr05G004274
描述uncharacterized SmilChr05G004274
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向56547995 - 56551574 / +

ID 对照

NCBI Gene IDLOC131025325
GeneID131025325
locus_tag-
NCBI NameLOC131025325
原始查询SmilChr05G004274

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述anthranilate phosphoribosyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:843394]; symbol=AT1G70570; hit=AT1G70570; species=arabidopsis; confidence=high
产物anthranilate phosphoribosyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:843394]; symbol=AT1G70570; hit=AT1G70570; species=arabidopsis; confidence=high
ArabidopsisAT1G70570 (AT1G70570)
anthranilate phosphoribosyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:843394]
identity=72.4; qcov=0.969; evalue=0; confidence=high
RiceOs02g0131200
-
identity=71.8; qcov=0.906; evalue=0; confidence=high
GOGO:0003921 (GMP synthase activity); GO:0005829 (cytosol); GO:0006177 (GMP biosynthetic process)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131025325

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057811034.1
2 Chloroplast stroma 叶绿体基质 0.80000 XP_057811034.1
3 Nucleus 细胞核 0.00000 XP_057811034.1
4 Chromosome 染色体 0.00000 XP_057811034.1
5 Centromere 着丝粒 0.00000 XP_057811034.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:56548306 CG C 1bp_deletion frameshift_variant 8 B131,B20,B85,B97,C58,C62,C78,C8
Chr5:56548308 ATG A 2bp_deletion frameshift_variant 8 B131,B20,B85,B97,C58,C62,C78,C8
Chr5:56548326 G A EMS_canonical_SNV CDS_variant 1 C83
Chr5:56548899 ATC A 2bp_deletion frameshift_variant 4 B123,B4,B56,B96
Chr5:56548899 ATC A 2bp_deletion CDS_variant 4 B123,B4,B56,B96
Chr5:56549070 G A EMS_canonical_SNV CDS_variant 1 B95
Chr5:56549097 C T EMS_canonical_SNV CDS_variant 2 C42,C81
Chr5:56549250 G A EMS_canonical_SNV CDS_variant 1 D11
Chr5:56549256 G A EMS_canonical_SNV CDS_variant 2 B12,C58
Chr5:56549260 C T EMS_canonical_SNV CDS_variant 1 B9
Chr5:56549477 G A EMS_canonical_SNV CDS_variant 2 B84,C23
Chr5:56549479 C T EMS_canonical_SNV CDS_variant 1 B21

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057955051.1
AAAGGAATAAAATATGTTTGATTAAATGGATTGGTATACAAAAAGTCATCAACTACACGGCTCACTGTAAATCCCACTGCTTCTGGCGACCGCCCCAAAGCAAAATCCATTCCGCCGCTGACGTCGCCGCCGCCGCCGACGTAAAACAAGCTAAAAATGAAAGCGTTATACAGTTCAGAACCAATCCTATCTCCAATTCCATCTCTCAAAATCAAGCCAGTAATCCGCATTTCAAAAAACTCCCTACGGTTTCCCCTTGC...

CDS

1 records

下载 CDS FASTA
LOC131025325
ATGAAAGCGTTATACAGTTCAGAACCAATCCTATCTCCAATTCCATCTCTCAAAATCAAGCCAGTAATCCGCATTTCAAAAAACTCCCTACGGTTTCCCCTTGCTCCGGCGAAGCGCTGTTGTTCGATCAGAGCTATTCTCGATTCAGTCTCCGTCGATGAGCTATCGGAAATCCGGAATCCGGCGCTTTCGACGTCGTATCGGAACCCGAAGTTACTGCGGCCAAATCAGACCGTGTTGGACGCCCAAACGAAGGTTTG...

Protein

1 records

下载 Protein FASTA
XP_057811034.1
MKALYSSEPILSPIPSLKIKPVIRISKNSLRFPLAPAKRCCSIRAILDSVSVDELSEIRNPALSTSYRNPKLLRPNQTVLDAQTKVCTGPTQTKPLNAEQAFKVLDTILKSVKGELKGEEEVSKAQLGAFFAAMTIRANAFPEPTQWSDGERTAMTYYWPHLVRVLPPDIIFLADPEQSIMGVSSSIGPRFVGNGTAEMRLVGALREILAGGHLGYEEVQGVLRDVLPLSSEDKKSAAASESLLAAFLIGQRMNRETDRE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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