Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004276`

染色体: Chr05 坐标: 56558874-56563270 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004276`
名称	SmilChr05G004276
描述	glutamate--glyoxylate aminotransferase 2
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56558874 - 56563270 / `+`

ID 对照

NCBI Gene ID	`LOC131025328`
GeneID	`131025328`
locus_tag	`-`
NCBI Name	`LOC131025328`
原始查询	`SmilChr05G004276`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glutamate--glyoxylate aminotransferase 2
产物	glutamate--glyoxylate aminotransferase 2
Arabidopsis	`AT1G70580` (AOAT2) alanine-2-oxoglutarate aminotransferase 2 [Source:NCBI gene (formerly Entrezgene);Acc:843395] identity=88.9; qcov=0.996; evalue=0; confidence=high
Rice	`Os07g0108300` (ALT-2) - identity=86.2; qcov=0.996; evalue=0; confidence=high
GO	GO:0004021 (L-alanine:2-oxoglutarate transaminase activity); GO:0008453 (L-alanine:glyoxylate transaminase activity); GO:0009058 (biosynthetic process); GO:0009853 (photorespiration); GO:0030170 (pyridoxal phosphate binding); GO:0047958 (glycine:2-oxoglutarate transaminase activity)
KEGG	smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00155 (Aminotran_1_2)
InterPro	-
eggNOG	-
NR	GeneID:131025328

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057811036.1`
2	Cytoplasm	细胞质	0.80000	`XP_057811036.1`
3	Nucleus	细胞核	0.00000	`XP_057811036.1`
4	Chromosome	染色体	0.00000	`XP_057811036.1`
5	Centromere	着丝粒	0.00000	`XP_057811036.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56560549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr5:56560699`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A10,B134,B140,C57,C80
`Chr5:56561027`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A4,B121
`Chr5:56561713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr5:56562951`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B25,C40,D11,D3
`Chr5:56563044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B139,B4,B80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811036.1

480 aa

240

480

Aminotran_1_2

PF00155 Aminotran_1_2 82-448 aa

XP_057811037.1

480 aa

240

480

Aminotran_1_2

PF00155 Aminotran_1_2 82-448 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811036.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	82	448	1.2e-36	127.3	Aminotransferase class I and II
`XP_057811037.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	82	448	1.2e-36	127.3	Aminotransferase class I and II

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955053.1
TCCACAAACAATTTTATTGAACTAAAATAAAAATAGAGAGGCACAATCAATATAGAGAAAGTCCAATTGGAAAATACAGTTTTGAAGCAGAACCACTCTTCCCACAATTACTTTATCCTGAACTCCTAAACTCCAAAATGAGGCCCAAAAATTCCATTGCATCAATCCAGCCCCTCTTCACTTTCAGTGGCTGTGGTGTTGCCTTGGAATTTATGTCTTCCCACATTGCCACCTACGCATTTATATAATATCCCCTTGCG...

XM_057955054.1
ACCTTCAAAGTTTAGCTCATTTTTCAGCTGTAAAATCAAGAAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTAGCCCTTTTGTGGTTGGTGTGGAGGTAGCTAGGTTTGATCTCAGGCATCTTCTTATTGCCGCACATATTTGATCGAGGCCCTTAAGAAGATACACACTTCATCATGTCAAAATCATTGGATTACGAGAATTTGAACGAAAATGTCAAGAAATGTCAGTATGCTGTCCGAGGGGAGCTGTATC...

CDS

2 records

下载 CDS FASTA

LOC131025328
ATGTCAAAATCATTGGATTACGAGAATTTGAACGAAAATGTCAAGAAATGTCAGTATGCTGTCCGAGGGGAGCTGTATCTTCGAGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACCAACGTTGGAAATCCTCATGCTCTCGGACAGAAACCTCTGACCTTTCCTCGCCAGGTCGTTGCTCTCTGCCAAGCTCCATTCCTGCTGGATGATCCTAACGTCGGGCTTTTATTTCCGGCTGATGCCATTGCCAA...

Protein

2 records

下载 Protein FASTA

XP_057811036.1
MSKSLDYENLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIAKAKHYLSLTSGGLGAYSDSRGLPGVRKEVADFIERRDGYPSDPELIFLTDGASKGVMQILQSIIRGAHDGILVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDIGNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANLKEILNFCYQNNLVLLGDEVYQQNIYQDER...

XP_057811037.1
MSKSLDYENLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIAKAKHYLSLTSGGLGAYSDSRGLPGVRKEVADFIERRDGYPSDPELIFLTDGASKGVMQILQSIIRGAHDGILVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDIGNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANLKEILNFCYQNNLVLLGDEVYQQNIYQDER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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