Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004300`

染色体: Chr05 坐标: 56709493-56713395 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004300`
名称	SmilChr05G004300
描述	protein SIEVE ELEMENT OCCLUSION C
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56709493 - 56713395 / `+`

ID 对照

NCBI Gene ID	`LOC131025350`
GeneID	`131025350`
locus_tag	`-`
NCBI Name	`LOC131025350`
原始查询	`SmilChr05G004300`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein SIEVE ELEMENT OCCLUSION C
产物	protein SIEVE ELEMENT OCCLUSION C
Arabidopsis	`AT1G67790` (AT1G67790) sieve element occlusion protein [Source:NCBI gene (formerly Entrezgene);Acc:843105] identity=31.9; qcov=1.04; evalue=1.83e-106; confidence=low
Rice	`-` -
GO	GO:0010088 (phloem development)
KEGG	-
Pfam	PF14576 (SEO_N); PF14577 (SEO_C)
InterPro	-
eggNOG	-
NR	GeneID:131025350

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057811065.1`
2	Cytoplasm	细胞质	0.60000	`XP_057811065.1`
3	Cell membrane	细胞膜	0.60000	`XP_057811066.1`
4	Nucleus	细胞核	0.00000	`XP_057811065.1`
5	Chromosome	染色体	0.00000	`XP_057811065.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56710646`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr5:56710698`	`AC`	`A`	1bp_deletion	frameshift_variant	62	A1,A11,A13,A14,A18,A3,A7,B101,B102,B104,B107,B109,B11,B110,B118,B123,B124,B133,B135,B138,B15,B17,B26,B29,B35,B37,B4,B41,B46,B47,B56,B57,B58,B60,B67,B68,B71,B72,B8,B86,B87,B94,B96,B97,C12,C19,C23,C24,C26,C37,C42,C43,C45,C64,C66,C73,C74,C75,C77,D1,D10,D11
`Chr5:56710837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A25,B50,B83,B88,C3
`Chr5:56711149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr5:56711386`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A15,C71
`Chr5:56711473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr5:56711922`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B136,B23,B67,C78,D6
`Chr5:56711940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B136,B23,B67,C78,D6
`Chr5:56712126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr5:56712239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B134,B31
`Chr5:56712323`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B106,B49,C35
`Chr5:56712362`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,B17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811065.1

687 aa

344

687

SEO_N

SEO_C

PF14576 SEO_N 47-305 aa PF14577 SEO_C 462-686 aa

XP_057811066.1

614 aa

307

614

SEO_N

SEO_C

PF14576 SEO_N 20-232 aa PF14577 SEO_C 389-613 aa

XP_057811067.1

581 aa

290

581

SEO_N

SEO_C

PF14576 SEO_N 1-199 aa PF14577 SEO_C 356-580 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811065.1`	Pfam	`PF14576`	SEO_N	Family	47	305	1.3e-55	189.3	Sieve element occlusion N-terminus
`XP_057811065.1`	Pfam	`PF14577`	SEO_C	Family	462	686	6.5e-55	186.8	Sieve element occlusion C-terminus
`XP_057811066.1`	Pfam	`PF14576`	SEO_N	Family	20	232	5.3e-52	177.5	Sieve element occlusion N-terminus
`XP_057811066.1`	Pfam	`PF14577`	SEO_C	Family	389	613	4.9e-55	187.2	Sieve element occlusion C-terminus
`XP_057811067.1`	Pfam	`PF14576`	SEO_N	Family	1	199	4e-47	161.5	Sieve element occlusion N-terminus
`XP_057811067.1`	Pfam	`PF14577`	SEO_C	Family	356	580	4.3e-55	187.4	Sieve element occlusion C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057955083.1
ACTGCCCCATTTGCAGGAGCATAATCACAACCAGAATAAAGCTGTATTCATAGCCATGATCAACTGCTGCTAGTCTTGTAAATATCTTGATGAAGCAGAAGACATGGTTTTAATGGAGATGGAAGATCTCTCTACTGATCTTGATCAAGAAATCGACACTGATCCATCACTTGCTCGCACCATATACAAGATCTCAAACGAGATGCTTGCTCGTTGCAACGGGGGCGAAAATCTGCATAGAAACACACTAGAAGTCCTTG...

XM_057955082.1
GCCCCATTTGCAGGAGCATAATCACAACCAGAATAAAGCTGTATTCATAGCCATGATCAACTGCTGCTAGTCTTGTAAATATCTTGATGAAGCAGAAGACATGGTTTTAATGGAGATGGAAGATCTCTCTACTATTACACAAGATGGCCGAATCTTGCAAAAAAGCTGCTGCGTGTGCTCTTCAAATGAGGATCTTTTGCTTCTCTGCACCACAGCATCATTTCATTGATTCATACATTCATGCATCAATGCCTTCACCT...

CDS

3 records

下载 CDS FASTA

LOC131025350
ATGGTTTTAATGGAGATGGAAGATCTCTCTACTGATCTTGATCAAGAAATCGACACTGATCCATCACTTGCTCGCACCATATACAAGATCTCAAACGAGATGCTTGCTCGTTGCAACGGGGGCGAAAATCTGCATAGAAACACACTAGAAGTCCTTGAAATGCTAGGCCCTTTTAGATGGGATGCTAAAATGGTGGTGGCTCTGGCATCCTTCACGCGTAGCTATGGCGTGTTCTGGCTCGTTCTGCAGCTGCAGTCGAA...

LOC131025350
ATGGCCGAATCTTGCAAAAAAGCTGCTGCGTGTGCTCTTCAAATGAGGATCTTTTGCTTCTCTGCACCACAGCATCATTTCATTGATTCATACATTCATGCATCAATGCCTTCACCTACAAGAGATGTTGGTGATTTTCTGATAAGGGAGGTCGAGCTCACGCACGACCCTGACGATCAGCAGCAGCTCGATTCCGAGCTGCTGCTGAATCTAGCAGAGGCTATTTTCAATTGCACTGCAGAGAATCCAACCGATCTTGA...

Protein

3 records

下载 Protein FASTA

XP_057811065.1
MAESCKKAAACALQMRIFCFSAPQHHFIDSYIHASMPSPTRDVGDFLIREVELTHDPDDQQQLDSELLLNLAEAIFNCTAENPTDLDQEIDTDPSLARTIYKISNEMLARCNGGENLHRNTLEVLEMLGPFRWDAKMVVALASFTRSYGVFWLVLQLQSKNALALSLAVVRRIPSTATFLKRRFTALNLLVGTILRLVRLLISYESLSVKHELVDDRDREITRSRICLASYWMCRSLLVCSSQIADLRNFSIDERSDRSV...

XP_057811066.1
MVLMEMEDLSTDLDQEIDTDPSLARTIYKISNEMLARCNGGENLHRNTLEVLEMLGPFRWDAKMVVALASFTRSYGVFWLVLQLQSKNALALSLAVVRRIPSTATFLKRRFTALNLLVGTILRLVRLLISYESLSVKHELVDDRDREITRSRICLASYWMCRSLLVCSSQIADLRNFSIDERSDRSVVAAWGLYSLGNKLSCLCSDLGECIEKCQQQIETRLYEKLLHVFKQKGDDNQKALRAFFAWKDEFPFKNSSKEK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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