当前解析结果
SmilChr05G004307| 统一新 Gene ID | SmilChr05G004307 |
|---|---|
| 名称 | SmilChr05G004307 |
| 描述 | putative multidrug resistance protein |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 56768788 - 56773132 / - |
| NCBI Gene ID | LOC131025359 |
|---|---|
| GeneID | 131025359 |
| locus_tag | - |
| NCBI Name | LOC131025359 |
| 原始查询 | SmilChr05G004307 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative multidrug resistance protein |
| 产物 | putative multidrug resistance protein |
| Arabidopsis | AT3G28345 (ABCB15)ABC transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:822463] identity=51.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os02g0190300 (OsABCB9)- identity=52.6; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025359 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057811074.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057811074.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057811074.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057811074.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057811074.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:56769156 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr5:56769544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B107,B138,B23,C55 |
Chr5:56769625 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:56769638 |
GAT |
G |
2bp_deletion | frameshift_variant | 2 | B12,B55 |
Chr5:56769638 |
GAT |
G |
2bp_deletion | CDS_variant | 2 | B12,B55 |
Chr5:56769712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
Chr5:56769747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,B67 |
Chr5:56769823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:56769842 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B98,C40,C85,D11 |
Chr5:56769887 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B133,B139,D11 |
Chr5:56769977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B13,B78 |
Chr5:56769978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057811074.1PF00664
ABC_membrane 19-292 aa
PF00005
ABC_tran 358-508 aa
PF00664
ABC_membrane 671-937 aa
PF00005
ABC_tran 1009-1157 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057811074.1 |
Pfam | PF00664 |
ABC_membrane | Family | 19 | 292 | 6.1e-89 | 299.1 | ABC transporter transmembrane region |
XP_057811074.1 |
Pfam | PF00005 |
ABC_tran | Domain | 358 | 508 | 5.1e-68 | 228.7 | ABC transporter |
XP_057811074.1 |
Pfam | PF00664 |
ABC_membrane | Family | 671 | 937 | 6.1e-89 | 299.1 | ABC transporter transmembrane region |
XP_057811074.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1009 | 1157 | 5.1e-68 | 228.7 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。