Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004314`

染色体: Chr05 坐标: 56815912-56819837 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004314`
名称	SmilChr05G004314
描述	actin-related protein 3-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56815912 - 56819837 / `-`

ID 对照

NCBI Gene ID	`LOC131025365`
GeneID	`131025365`
locus_tag	`-`
NCBI Name	`LOC131025365`
原始查询	`SmilChr05G004314`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	actin-related protein 3-like
产物	actin-related protein 3-like
Arabidopsis	`AT1G13180` (DIS1) Actin-like ATPase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837876] identity=83.5; qcov=0.988; evalue=0; confidence=high
Rice	`Os02g0596900` (ARP3) - identity=83.4; qcov=0.993; evalue=0; confidence=high
GO	GO:0005885 (Arp2/3 protein complex); GO:0030479 (actin cortical patch); GO:0034314 (Arp2/3 complex-mediated actin nucleation); GO:0051015 (actin filament binding)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil05100 (Bacterial invasion of epithelial cells - Salvia miltiorrhiza (redroot sage))
Pfam	PF00022 (Actin)
InterPro	-
eggNOG	-
NR	GeneID:131025365

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057811079.1`
2	Cytoskeleton	细胞骨架	0.40000	`XP_057811079.1`
3	Cytoplasm	细胞质	0.40000	`XP_057811080.1`
4	Cytosol	细胞质基质	0.20000	`XP_057811079.1`
5	Nucleoplasm	核质	0.20000	`XP_057811080.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56816392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr5:56816405`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B19,C10,C63
`Chr5:56816631`	`T`	`TA`	1bp_insertion	frameshift_variant	87	A1,A14,A15,A21,A22,A25,A5,A9,B104,B107,B11,B117,B119,B122,B123,B126,B134,B137,B138,B14,B140,B16,B17,B18,B19,B2,B21,B22,B24,B27,B3,B31,B34,B36,B38,B39,B41,B42,B43,B44,B56,B57,B58,B59,B6,B66,B67,B71,B72,B76,B8,B86,B89,B9,B94,B95,B96,C10,C13,C2,C20,C21,C27,C3,C32,C34,C37,C38,C41,C42,C44,C50,C55,C59,C6,C62,C63,C65,C67,C68,C71,C80,C81,D1,D11,D8,D9
`Chr5:56816650`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	A3,B10,B122,B41,B74,C13,C57
`Chr5:56816676`	`ACT`	`A`	2bp_deletion	frameshift_variant	1	C40
`Chr5:56816676`	`ACT`	`A`	2bp_deletion	CDS_variant	1	C40
`Chr5:56816729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A25,B95,C80
`Chr5:56816753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A9,C2,C38,D1,D8
`Chr5:56816952`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B19,C10,C63
`Chr5:56816994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B124,B21,B4,B65
`Chr5:56817170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr5:56817581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811079.1

443 aa

222

443

Actin

PF00022 Actin 7-405 aa

XP_057811080.1

430 aa

215

430

Actin

PF00022 Actin 7-421 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811079.1`	Pfam	`PF00022`	Actin	Family	7	405	8.5e-76	255.9	Actin
`XP_057811080.1`	Pfam	`PF00022`	Actin	Family	7	421	4.4e-82	276.6	Actin

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955097.1
CCTGTAATGTAATGAGAAAAAGCAGAGTATCTATATATATGTAATTCATAACTCCAAAATCCGTATAGCCGACCAACTCACTGTGTAACATTCTCTTTTCACCATCCGAATTCGAGCAACAACAATTAATTCCGAATTCAACCGTTGCTTGTTTGATTGCTAGAATTCGGAAAATAAAAGAAAATGGTCCCTTTTGTTTTTTTCTTTTCTTGTTTCTCCTGAAAATTGAAATCTTCGCCATCAATTTCATATATACGAGC...

XM_057955096.1
TAATGTAATGAGAAAAAGCAGAGTATCTATATATATGTAATTCATAACTCCAAAATCCGTATAGCCGACCAACTCACTGTGTAACATTCTCTTTTCACCATCCGAATTCGAGCAACAACAATTAATTCCGAATTCAACCGTTGCTTGTTTGATTGCTAGAATTCGGAAAATAAAAGAAAATGGTCCCTTTTGTTTTTTTCTTTTCTTGTTTCTCCTGAAAATTGAAATCTTCGCCATCAATTTCATATATACGAGCTGAA...

CDS

2 records

下载 CDS FASTA

LOC131025365
ATGGAGTCCGCCGCCTCGCGCCCTGCTGTGGTAATCGACAATGGCACTGGGTATACTAAAATGGGATTTGCCGGAAATGTGGAGCCGTGCTTCATAGTTCCGACTGTTGTTGCGTTAAACAACTCGTTCTTGAACCAGCCGCGGCCGAGTTCTAGCAAGAGCAACAATTGGCTGGGGCAGCACAATGCAGGGGTGATGGCGGATCTCGATTTCTATATAGGAGAAGAGGCGTTGTCTAGATCTAAATCTAGCACCACTTA...

Protein

2 records

下载 Protein FASTA

XP_057811079.1
MESAASRPAVVIDNGTGYTKMGFAGNVEPCFIVPTVVALNNSFLNQPRPSSSKSNNWLGQHNAGVMADLDFYIGEEALSRSKSSTTYNLSYPIKQGKVDNWDSMERFWQHCIFNYLRCDPEDHYFCLTESALTAPESREYTGEIMFETFNVPGLYIAVQPVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVADGYVIGSSIKSIPISGKDVTRFIQQLMRERGEHVPPEDSFDVARRVKEMYCYTCSDIVKEFNKHDKE...

XP_057811080.1
MESAASRPAVVIDNGTGYTKMGFAGNVEPCFIVPTVVALNNSFLNQPRPSSSKSNNWLGQHNAGVMADLDFYIGEEALSRSKSSTTYNLSYPIKQGKVDNWDSMERFWQHCIFNYLRCDPEDHYFCLTESALTAPESREYTGEIMFETFNVPGLYIAVQPVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVADGYVIGSSIKSIPISGKDVTRFIQQLMRERGEHVPPEDSFDVARRVKEMYCYTCSDIVKEFNKHDKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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