Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004317`

染色体: Chr05 坐标: 56832609-56836440 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004317`
名称	SmilChr05G004317
描述	ultraviolet-B receptor UVR8
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56832609 - 56836440 / `-`

ID 对照

NCBI Gene ID	`LOC131025369`
GeneID	`131025369`
locus_tag	`-`
NCBI Name	`LOC131025369`
原始查询	`SmilChr05G004317`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ultraviolet-B receptor UVR8
产物	ultraviolet-B receptor UVR8
Arabidopsis	`AT3G26100` (AT3G26100) Regulator of chromosome condensation (RCC1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:822208] identity=76.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os12g0284000` - identity=79.1; qcov=0.987; evalue=0; confidence=high
GO	-
KEGG	-
Pfam	PF00415 (RCC1); PF13540 (RCC1_2); PF25390 (WD40_RLD)
InterPro	-
eggNOG	-
NR	GeneID:131025369

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057811083.1`
2	Cytoplasm	细胞质	0.80000	`XP_057811083.1`
3	Nucleus	细胞核	0.00000	`XP_057811083.1`
4	Chromosome	染色体	0.00000	`XP_057811083.1`
5	Centromere	着丝粒	0.00000	`XP_057811083.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56832837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:56832848`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr5:56832870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr5:56832883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr5:56832942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B21,B65
`Chr5:56832978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B16,B48,B77,D4
`Chr5:56833258`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B133
`Chr5:56833333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr5:56833360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B16,B48,B77,D4
`Chr5:56833375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr5:56833420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,C16
`Chr5:56833435`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B115,B25,B82,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811083.1

528 aa

264

528

WD40_RLD

RCC1_2

RCC1

RCC1_2

PF25390 WD40_RLD 141-475 aa PF13540 RCC1_2 145-169 aa PF00415 RCC1 156-205 aa PF00415 RCC1 209-259 aa PF00415 RCC1 262-311 aa PF00415 RCC1 320-369 aa PF00415 RCC1 372-421 aa PF00415 RCC1 425-475 aa PF13540 RCC1_2 484-505 aa

XP_057811084.1

528 aa

264

528

WD40_RLD

RCC1_2

RCC1

RCC1_2

XP_057811085.1

528 aa

264

528

WD40_RLD

RCC1_2

RCC1

RCC1_2

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811083.1`	Pfam	`PF25390`	WD40_RLD	Repeat	141	475	2.4e-71	241.7	RCC1-like domain
`XP_057811083.1`	Pfam	`PF13540`	RCC1_2	Repeat	145	169	2.9e-33	113.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057811083.1`	Pfam	`PF00415`	RCC1	Repeat	156	205	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811083.1`	Pfam	`PF00415`	RCC1	Repeat	209	259	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811083.1`	Pfam	`PF00415`	RCC1	Repeat	262	311	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811083.1`	Pfam	`PF00415`	RCC1	Repeat	320	369	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811083.1`	Pfam	`PF00415`	RCC1	Repeat	372	421	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811083.1`	Pfam	`PF00415`	RCC1	Repeat	425	475	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811083.1`	Pfam	`PF13540`	RCC1_2	Repeat	484	505	2.9e-33	113.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057811084.1`	Pfam	`PF25390`	WD40_RLD	Repeat	141	475	2.4e-71	241.7	RCC1-like domain
`XP_057811084.1`	Pfam	`PF13540`	RCC1_2	Repeat	145	169	2.9e-33	113.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057811084.1`	Pfam	`PF00415`	RCC1	Repeat	156	205	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811084.1`	Pfam	`PF00415`	RCC1	Repeat	209	259	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811084.1`	Pfam	`PF00415`	RCC1	Repeat	262	311	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811084.1`	Pfam	`PF00415`	RCC1	Repeat	320	369	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811084.1`	Pfam	`PF00415`	RCC1	Repeat	372	421	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811084.1`	Pfam	`PF00415`	RCC1	Repeat	425	475	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811084.1`	Pfam	`PF13540`	RCC1_2	Repeat	484	505	2.9e-33	113.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057811085.1`	Pfam	`PF25390`	WD40_RLD	Repeat	141	475	2.4e-71	241.7	RCC1-like domain
`XP_057811085.1`	Pfam	`PF13540`	RCC1_2	Repeat	145	169	2.9e-33	113.5	Regulator of chromosome condensation (RCC1) repeat
`XP_057811085.1`	Pfam	`PF00415`	RCC1	Repeat	156	205	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811085.1`	Pfam	`PF00415`	RCC1	Repeat	209	259	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811085.1`	Pfam	`PF00415`	RCC1	Repeat	262	311	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811085.1`	Pfam	`PF00415`	RCC1	Repeat	320	369	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811085.1`	Pfam	`PF00415`	RCC1	Repeat	372	421	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811085.1`	Pfam	`PF00415`	RCC1	Repeat	425	475	1e-68	228.4	Regulator of chromosome condensation (RCC1) repeat
`XP_057811085.1`	Pfam	`PF13540`	RCC1_2	Repeat	484	505	2.9e-33	113.5	Regulator of chromosome condensation (RCC1) repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057955100.1
CAGAAGCCACAAGCAAAACAGGGTTGACACCTCATCTCTTTCTGTTCCCTTCAATTTATGTACATTCCATCCGATTTTGAGAGAAAATAAAGGCCTTCTATATAACCTCACACACATTCACACACATACTATCTCTTTCCGAACAAAAACTCTTCCCTTCCTCTCTCTCTCTCCCCCTTCTCTCTCTCAAAAAAGAAAAGGAATTCTACACAAAAATCCCATCAACAAAGATCAAATTTTTAAGCATCGCTCGTCGTCTT...

XM_057955102.1
CTTCAATTTATGTACATTCCATCCGATTTTGAGAGAAAATAAAGGCCTTCTATATAACCTCACACACATTCACACACATACTATCTCTTTCCGAACAAAAACTCTTCCCTTCCTCTCTCTCTCTCCCCCTTCTCTCTCTCAAAAAAGAAAAGGAATTCTACACAAAAATCCCATCAACAAAGATCAAATTTTTAAGCATCGCTCGTCGTCTTTCAGGCTAAAAATTCAACCAACAATTCGATTATCCATTCTTGCCAAGT...

CDS

3 records

下载 CDS FASTA

LOC131025369
ATGGATGCCACGGCTAGTGGAGCATCGAGCGTTCAGTACCACAACATCAGCGATCAGACAATCGCGCCCCTTGTTCCTAGGCAACAACGGCATTGCTTTGGAAATGCAAGCCCCGGGGAGTTCCCGTTGTCTGCTAACCCGTCCATCGTCCTCCACTTCCTCTCCGCCTGCAATTTGGATCCGCAAGATCTTGCAAAACTCGAGGCGACGTGTTCCTTCTTTAGGCAGCCTGCGCACTTCGCCCCTGACCACGAGCTCTC...

Protein

3 records

下载 Protein FASTA

XP_057811083.1
MDATASGASSVQYHNISDQTIAPLVPRQQRHCFGNASPGEFPLSANPSIVLHFLSACNLDPQDLAKLEATCSFFRQPAHFAPDHELSLAELAALDMCQKRAIFKPMAIEQQQCLKQRCGGSWKLVLRYLLAGEACTRREKSQAIAGPGHSLAVTSNGAVYSFGSNSSGQLGHGTTDEESRPSLIRSLQGIRIIHAAAGAGRTMLISDAGRVYAFGKDSFGEAEYGAQGNKLVTSPQLVESLKDIFVVQAAIGNFFTAVLS...

XP_057811084.1
MDATASGASSVQYHNISDQTIAPLVPRQQRHCFGNASPGEFPLSANPSIVLHFLSACNLDPQDLAKLEATCSFFRQPAHFAPDHELSLAELAALDMCQKRAIFKPMAIEQQQCLKQRCGGSWKLVLRYLLAGEACTRREKSQAIAGPGHSLAVTSNGAVYSFGSNSSGQLGHGTTDEESRPSLIRSLQGIRIIHAAAGAGRTMLISDAGRVYAFGKDSFGEAEYGAQGNKLVTSPQLVESLKDIFVVQAAIGNFFTAVLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器