Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004322`

染色体: Chr05 坐标: 56870097-56873703 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004322`
名称	SmilChr05G004322
描述	two-component response regulator ARR11-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	56870097 - 56873703 / `+`

ID 对照

NCBI Gene ID	`LOC131025374`
GeneID	`131025374`
locus_tag	`-`
NCBI Name	`LOC131025374`
原始查询	`SmilChr05G004322`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	two-component response regulator ARR11-like
产物	two-component response regulator ARR11-like
Arabidopsis	`AT1G67710` (ARR11) response regulator 11 [Source:NCBI gene (formerly Entrezgene);Acc:843096] identity=67; qcov=0.47; evalue=8.54e-87; confidence=medium
Rice	`Os01g0904700` (RR26) - identity=71.5; qcov=0.414; evalue=1.44e-93; confidence=low
GO	GO:0000160 (phosphorelay signal transduction system); GO:0003677 (DNA binding); GO:0009736 (cytokinin-activated signaling pathway)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00072 (Response_reg); PF00249 (Myb_DNA-binding)
InterPro	-
eggNOG	-
NR	GeneID:131025374

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057811091.1`
2	Chromosome	染色体	0.00000	`XP_057811091.1`
3	Centromere	着丝粒	0.00000	`XP_057811091.1`
4	Chromatin	染色质	0.00000	`XP_057811091.1`
5	Telomere	端粒	0.00000	`XP_057811091.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:56870460`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,B122,B55,D10
`Chr5:56870465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:56870471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:56870477`	`GT`	`G`	1bp_deletion	frameshift_variant	4	B12,B122,B55,D10
`Chr5:56870477`	`GT`	`G`	1bp_deletion	CDS_variant	4	B12,B122,B55,D10
`Chr5:56870494`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr5:56870520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B55,D10
`Chr5:56870532`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B55,D10
`Chr5:56871671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A24,B104,B28,B71,C62
`Chr5:56871834`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B19,C10,C63,D11,D9
`Chr5:56871927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr5:56872112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057811091.1

555 aa

278

555

Response_reg

Myb_DNA-binding

PF00072 Response_reg 20-129 aa PF00249 Myb_DNA-binding 200-250 aa

XP_057811092.1

483 aa

242

483

Response_reg

Myb_DNA-binding

PF00072 Response_reg 1-57 aa PF00249 Myb_DNA-binding 128-178 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057811091.1`	Pfam	`PF00072`	Response_reg	Domain	20	129	1.2e-25	90.6	Response regulator receiver domain
`XP_057811091.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	200	250	2.7e-08	34.5	Myb-like DNA-binding domain
`XP_057811092.1`	Pfam	`PF00072`	Response_reg	Domain	1	57	3.1e-09	37.7	Response regulator receiver domain
`XP_057811092.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	128	178	3e-08	34.4	Myb-like DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057955108.1
GGGGTCAGTTAAAAACTCATGTAGAAGGATGAAGCCGTCGATTTGCATAGACCGTTAACAAGAAGCTAACAACAAAGGCCGGCGCCAGATATTCGATGTTCTCTTCCTTGCCCTTCCCATAAAAATCCACACATTCCTCTACTTTTCGAGCTCTCTCTCTCACTCTCTCTCTTGTCTTTCTCTCACATACTATAATTGTCAAGAGGGAATAATATATATACGCAGCGCCAACACGTACGCGCTTGTTTTTGTATATCTTA...

XM_057955109.1
GTTGCTTTTTGTTGCCAAGATTTGTTGAAATGCAACTGCCCTTTTTGTCTTTTGTTGTTGAATTCTTTTGTCTGTCTGGTTTTTGGTTGATAAAGATTGTTTCTTTATGGCTGTGTGTTTTCTGCTCTTTTCTTGATTGGCATATTTTGAGGTGTGATTGCGTGAAGATGGAAGAGTTAATTAACTGGCAATCTGTAGTAGGCTGTTTTGATGGTTTTAGGGCTAAGGAAAGAAAAAAAATGAAGTGAAATTCAAGATAA...

CDS

2 records

下载 CDS FASTA

LOC131025374
ATGGATTCGAGCGGGTTTTCGTCGCCGCGGACCGACTGTTTTCCGGCGGGTCTCCGGGTGCTCGTGGTGGACGACGATCCCACGTGGCTCAAGATTCTTGAGAAGATGCTTAAGAAGTGCAATTATGAAGTCACAACGTGTAATTTGGCGAGAGAGGCTCTTGACTTGCTACGCGAGCGCAAGGATGGGTTCGACATTGTGATCAGCGACGTGAACATGCCAGACATGGATGGTTTCAAGCTTCTGGAGCACGTCGGCCT...

LOC131025374
ATGCCAGACATGGATGGTTTCAAGCTTCTGGAGCACGTCGGCCTGGAGATGGATCTGCCCGTGATAATGATGTCCGTGGATGGGGAGACGAGCCGGGTGATGAAGGGGGTCCAGCACGGCGCCTGTGATTACCTTCTCAAGCCGATCAGGATGAAGGAGCTCCGCAACATATGGCAGCACGTGTTCAGGAAGAGGATACACGAGGTGAGGGACATTGAAGGCCACGAGAGCCTTGACGAGATGATGCTCAGAGGCGGAGC...

Protein

2 records

下载 Protein FASTA

XP_057811091.1
MDSSGFSSPRTDCFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCNLAREALDLLRERKDGFDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVRDIEGHESLDEMMLRGGADLSDDGFFFGGDPVSGKKRKDVDYKGDDRVGGDPSSLKKARVVWTVDLHQKFVKAVNLIGFEKVGPKKILDLMGVPWLTRENVASHLQKYRLYLSRLQKEN...

XP_057811092.1
MPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVRDIEGHESLDEMMLRGGADLSDDGFFFGGDPVSGKKRKDVDYKGDDRVGGDPSSLKKARVVWTVDLHQKFVKAVNLIGFEKVGPKKILDLMGVPWLTRENVASHLQKYRLYLSRLQKENELRATLGGAKLSDSSPKDAAAGGNAGLQTPVTKASPCLKHDDPKSCEGNVKSMPIAEAKAAAEVNDLAKSST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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